Table 1.
Genome sequences used in this study
| GenBank accession | Name (‘coronavirus’ is abbreviated as CoV in all) | Subspecies | Isolated from |
|---|---|---|---|
| KT368891 | Camel/Riyadh/Ry123/2015 | Embecovirus * | Camel, Saudi Arabia |
| FJ938067 | Human enteric CoV strain 4408 | Embecovirus | Human |
| AY391777 | HCoV‐OC43 | Embecovirus | Human, UK |
| JN874559 | Rabbit CoV HKU14 | Embecovirus † | Rabbit, China |
| KY370046 | RtMruf‐CoV‐2/JL2014 | Embecovirus † | Vole: Myodes rufocanus, China |
| LC061274 | Equine CoV strain Obihiro12‐2 | Embecovirus | Horse, Japan |
| KM349744 | HKU24 strain HKU24‐R05010I | Embecovirus † | Rat: Rattus norvegicus, China |
| MK167038 | Human CoV HKU1 str. SC2521 | Embecovirus † | Human, USA |
| FJ647223 | Murine CoV MHV‐1 | Embecovirus | Mouse, USA |
| MG693170 | Bat CoV isolate CMR66 | Unclassified | Bat: Eidolon helvum, Cameroon |
| KU762338 | CoV isolate GCCDC1 356 | Nobecovirus | Bat: Rousettus leschenaulti, China |
| EF065513 | Bat CoV HKU9‐1 | Nobecovirus | Bat, China |
| MK492263 | Bat CoV strain BtCoV92 | Nobecovirus | Bat: Cynopterus brachyotis, Singapore |
| KC545386 | ErinaceusCoV/2012‐216/GER/2012 | Merbecovirus | Hedgehog: Erinaceus europaeus, Germany |
| MK679660 | Hedgehog CoV 1 | Merbecovirus | Hedgehog: Erinaceus europaeus, UK |
| KJ473820 | BtPa‐BetaCoV/GD2013 | Merbecovirus † | Bat: Pipistrellus abramus, China |
| JX869059 | MERS, HCoV‐EMC/2012 | Merbecovirus | Human, Saudi Arabia |
| NC038294 | Betacoronavirus England 1 | Merbecovirus | Human, UK |
| MN611519 | CoV HKU4‐related isolate GZ131656 | Merbecovirus | Bat: Tylonycteris pachypus, China |
| KU182965 | CoV isolate JPDB144 | Merbecovirus † | Bat: Myotis daubentonii, China |
| KX442565 | CoV HKU25 isolate NL140462 | Merbecovirus † | Bat: Hypsugo pulveratus, China |
| KJ473821 | BtVs‐BetaCoV/SC2013 | n.s. | Bat: Vespertilio superans, China |
| KF636752 | Bat Hp‐betacoronavirus/Zhejiang2013 | Hibecovirus | Bat: Hipposideros pratti, China |
| HQ166910 | Zaria bat CoV strain ZBCoV | Unclassified | Bat: Hipposideros commersoni, Nigeria |
| MG772933 | bat‐SL‐CoVZC45 | Sarbecovirus | Bat: Rhinolophus sinicus, China |
| NC045512 | 2019_nCoV, isolate Wuhan‐Hu‐1 | Sarbecovirus | Human, China |
| GU190215 | Bat CoV BM48‐31/BGR/2008 | Sarbecovirus † | Bat: Rhinolophus blasii, Bulgaria |
| KY352407 | SARS‐like CoV strai nBtKY72 | Sarbecovirus † | Bat: Rhinolophus sp., Kenya |
| FJ882963 | SARS CoV P2 | Sarbecovirus | Human, USA |
| MK211376 | BtRs‐BetaCoV/YN2018B | Sarbecovirus † | Bat: Rhinolophus affinis, China |
| MN611520 | Bat CoV HKU5‐related isolate BY140568 | Merbecovirus | Bat: Pipistrellus abramus, China |
| KU182966‡ | Bat CoV P1ab | Unclassified | Bat, Murina leucogaster, China |
| DQ412042‡ | Bat SARS CoV Rf1 | Sarbecovirus | Bat: Rhinolophus ferrumequinum, China |
| KP886808 | Bat SARS‐like CoV YNLF_31C | Sarbecovirus | Bat: Rhinolophus ferrumequinum, China |
| KJ473813 | BtRf‐BetaCoV/SX2013 | n.s. | Bat: Rhinolophus ferrumequinum, China |
| Y417150 | SARS‐like CoV isolate Rs4874 | n.s. | Bat: Rhinolophus sinicus, China |
| KF367457 | Bat SARS‐like CoV WIV1 | Sarbecovirus | Bat: Rhinolophus sinicus, China |
| KF569996 | Rhinolophus affinis CoV isolate LYRa11 | Sarbecovirus | Bat: Rhinolophus affinis, China |
| KY417146 | Bat SARS‐like CoV isolate Rs4231 | n.s. | Bat: Rhinolophus sinicus, China |
| MK211379 | BtRt‐BetaCoV/GX2018 | Unclassified | Bat: Rhinolophus affinis, China |
| GQ153539 | Bat SARS CoV HKU3‐4 | Sarbecovirus | Bat, China |
| KY770858 | Bat CoV isolate Anlong‐103 | Unclassified | Bat: Rhinolophus sinicus, China |
| KF294457 | SARS‐related bat CoV isolate Longquan‐140 | Sarbecovirus | Bat: Rhinolophus monoceros, China |
n.s., not specified.
* In the GenBank file described as unclassified Alphacoronavirus.
† As per Lu et al. (12).
‡ Upstream or downstream noncoding sequences were not available.