Table 1.
Details of reverse transcriptase‐polymerase chain reactions (RT‐PCRs) for the detection of bovine torovirus‐, bovine coronavirus‐ and rotavirus‐specific nucleic acids
| Bovine torovirus | Bovine coronavirus | Rotavirus | |
|---|---|---|---|
| Amplification product | 741 bp | 407 bp | 433 bp |
| Upstream primer | 5′‐GTG TTA AGT TTG TGC AAA AAT G‐3′ | 5′‐GCC GAT CAG TCC GAC CAA TC‐3′ | 5′‐AAG TAG CTG GAT TTG ATT ATT C‐3′ |
| Downstream primer | 5′‐TGC ATG AAC TCT ATA TGG TGT‐3′ | 5′‐AGA ATG TCA GCC GGG GTA T‐3′ | 5′‐GAC TCA CAA ACT GCA GAT TCA A‐3′ |
| Volume template | 2.5 μl | 1.6 μl | 1.5 μl |
| Volume RT‐PCR mixture | 22.5 μl | 18.4 μl | 13.5 μl |
| Reverse transcription | 50°C, 30 min | 50°C, 30 min | 50°C, 30 min |
| Initial denaturation | 95°C, 15 min | 95°C, 15 min | 95°C, 15 min |
| Number of cycles | 35 | 35 | 40 |
| Temperature profile | 95°C, 1 min | 94°C, 30 s | 94°C, 1 min |
| 55°C, 1.5 min | 58°C, 1 min | 55°C, 1 min | |
| 72°C, 1.5 min | 72°C, 2 min | 72°C, 1 min | |
| Final extension | 72°C, 10 min | 72°C, 10 min | 72°C, 7 min |