Table 2. The BP terms related to the growth and development of skeletal muscle in Jinghai yellow chicken.
| Group | GO accession | BP term | Corrected p-Value | DEGs | Important genes |
|---|---|---|---|---|---|
| F8FvsF4F | GO:0030198 | extracellular matrix organization | 0.00025248 | 17 (7) | COL5A1, ANXA2, KAZALD1, ITGA8, PDGFRA, LCP1, TGFBI |
| GO:0043062 | extracellular structure organization | 0.00025248 | 17 (7) | COL5A1, ANXA2, ITGA8, LCP1, POSTN, TGFBI, COL5A2 | |
| GO:0007155 | cell adhesion | 0.013015 | 37 (10) | COL5A1, STK10, TGFBR3, CYTH1, ITGA8, MYOC, TGFBI, SDK2, DPP4, ZNF703 | |
| GO:0022610 | biological adhesion | 0.013015 | 37 (11) | COL5A1, TLN1, TGFBR3, CNTN1, ANXA1, POSTN, MYOC, TGFBI, SDK2, ZNF703, COL6A2 | |
| F8SvsF4S | GO:0030198 | extracellular matrix organization | 0.0013443 | 12 (7) | COL5A1, LAMC1, HSPA8, LTBP2, PXDN, COL5A2, COL3A1 |
| GO:0043062 | extracellular structure organization | 0.0013443 | 12 (7) | COL5A1, HSPA8, LTBP2, COL5A2, COL3A1, COL18A1, PXDN | |
| GO:0051301 | cell division | 0.0036042 | 15 (8) | TOP2A, PLK1, KIF23, ECT2, CDT1, KIF18B, ASPM, RACGAP1 | |
| GO:1902850 | microtubule cytoskeleton organization involved in mitosis | 0.019561 | 6 (6) | PLK1, KIF23, CDC20, CDT1, NDC80, RACGAP1 | |
| GO:0097435 | fibril organization | 0.021289 | 4 (4) | COL5A1, HSPA8, LTBP2, COL3A1 | |
| GO:0000281 | mitotic cytokinesis | 0.021951 | 5 (5) | PLK1, KIF23, NUSAP1, RACGAP1, KIF20A | |
| GO:0007067 | mitotic nuclear division | 0.025966 | 10 (8) | PLK1, KIF23, NUSAP1, CDT1, NDC80, SMC2, KIF18B, RACGAP1 | |
| GO:0000278 | mitotic cell cycle | 0.025966 | 18 (10) | CDK1, PLK1, KIF23, CDC20, CDT1, SMC2, CCNB3, KIF18B, RACGAP1, FGFR1 | |
| GO:0061640 | cytoskeleton-dependent cytokinesis | 0.033177 | 5 (5) | PLK1, KIF23, NUSAP1, RACGAP1, KIF20A | |
| GO:1903047 | mitotic cell cycle process | 0.039601 | 15 (11) | CDK1, PLK1, KIF23, CDC20, CDT1, SMC2, CCNB3, KIF18B, RACGAP1, KIF20A, FGFR1 | |
| M8SvsM4S | GO:0009157 | deoxyribonucleoside monophosphate biosynthetic process | 1 | 2 (2) | TK1, DCTD |
| GO:0009162 | deoxyribonucleoside monophosphate metabolic process | 1 | 2 (2) | TK1, DCTD | |
| GO:0006631 | fatty acid metabolic process | 1 | 5 (5) | CPT1A, PDK4, ELOVL1, ACSL1, SREBF1 | |
| GO:0035384 | thioester biosynthetic process | 1 | 2 (2) | PDK4, ELOVL1 | |
| GO:0071616 | acyl-CoA biosynthetic process | 1 | 2 (2) | PDK4, ELOVL1 |
Notes.
- GO
- Gene Ontology
- BP
- Biological Process
- DEGs
- differentially expressed genes: the first number is the amount of all genes enriched in the BP term, and the second number is the genes listed in the next column