Table 3. The KEGG pathways related to the growth and development of skeletal muscle in Jinghai yellow chicken.
| Group | KEGG ID | KEGG pathway | Corrected p-Value | DEGs | Important genes |
|---|---|---|---|---|---|
| F8FvsF4F | gga04512 | ECM-receptor interaction | 3.95E−07 | 15 (6) | COL5A1, COLOA2, COL6A1, ITGA9, HSPG2, FN1 |
| gga04510 | Focal adhesion | 2.08E−06 | 21 (6) | PAK1, COL5A1, PIK3CD, COL4A2, COL2A1, COL5A2 | |
| F8SvsF4S | gga04512 | ECM-receptor interaction | 1.85E−10 | 15 (6) | COL5A1, COL6A3, COL6A1, LAMC1, COL1A2, COL1A1 |
| gga04510 | Focal adhesion | 9.48E−06 | 15 (5) | COL5A1, COL6A3, LAMC1, LAMB1, COL1A1 | |
| gga04110 | Cell cycle | 0.000274 | 10 (5) | CDK1, WEE1, PLK1, CDC20, CCNB3 | |
| M8SvsM4S | gga04110 | Cell cycle | 0.003644 | 6 (6) | MCM2, CDC20, TGFB3, MCM5, MCM3, CCNB3 |
| gga03030 | DNA replication | 0.021531 | 3 (3) | MCM2, MCM3, MCM5 |
Notes.
- KEGG
- Kyoto Encyclopedia of Genes and Genomes
- DEGs
- differentially expressed genes: the first number is the amount of all genes enriched in the KEGG pathway, and the second number is the genes listed in the next column