Table 3.

The summary statistics of genetic and phenotypic variance explained by significant SNP

				MAF		Effect		The genetic variance explained by SNP3		The phenotypic variance explained by SNP4
SNP ID	Chr1	Bp2	P-value	Landrace	Yorkshire	Landrace	Yorkshire	Landrace	Yorkshire	Landrace	Yorkshire
ASGA0028695	6	83,184,006	1.46 × 10–7	0.014	0.106	−271.09	−85.34	0.2158	0.1273	0.0447	0.0394
WU_10.2_6_75058017	6	81,122,702	1.68 × 10–7	0.014	0.158	−271.09	−71.09	0.2158	0.1294	0.0447	0.0401
MARC0002557	6	81,562,859	1.90 × 10–7	0.014	0.144	−271.09	−74.96	0.2158	0.1282	0.0447	0.0397
MARC0021944	6	82,148,927	2.69 × 10–7	0.014	0.11	−271.09	−83.12	0.2158	0.1242	0.0447	0.0384
ASGA0099279	6	75,202,125	1.05 × 10–6	0.017	0.24	−231.24	−59.96	0.1823	0.1145	0.0378	0.0354

¹ and ² indicate the chromosome and position of significant SNP, respectively.

³ and ⁴ indicate the genetic and phenotypic variance components explained by each SNP in Landrace and Yorkshire, respectively, suggesting strong linkage existed in ASGA0028695, WU_10.2_6_75058017, MARC0002557, and MARC0021944 in Landrace population.