Table I.
References for the PCR That Were Used for the Detection of Respiratory Viruses
| Viral etiology | Sequence of primers and probes | Protocol reference | |
|---|---|---|---|
| Influenza virus A virus A/H1N1psw 2009 | GRswH1‐349F | GAGCTAAGAGAGCAATTGA |
Duchamp et al. [2010 ] |
| GRswH1‐601R | GTAGATGGATGGTGAATG | ||
| GRswH1‐538Pr | FAM‐TTGCTGAGCTTTGGGTATGA–TAMRA | ||
| Influenza virus A virus H3N2 | INFA‐23 F | CATYCTGTTGTATATGAGGCCCAT |
van Elden et al. [2001 ] |
| INFA 1 R | GGACTGCAGCGTAGACGCTT | ||
| INFA Pr | FAM‐CTCAGTTATTCTGCTGGTGCACTTGCCA‐TAMRA | ||
| Rhinovirus | RHI2 F | C56 GCC 7GC GTG GC |
Lu et al. [2008 ] |
| RHI2 R | GAA ACA CGG ACA CCC AAA GTA | ||
| RHI2 Pr | FAM‐TCC TCC GGC CCC TGA ATG YGG C‐TAMRA | ||
| Metapneumovirus | NLN‐F | CATATAAGCATGCTATATTAAAAGAGTCTC |
Mackay et al. [2003 ] |
| NLN‐R | CCTATTTCTGCAGCATATTTGTAATCAG | ||
| NLN‐Pr | TGY AAT GAT GAG GGT GTC ACT GCG GTT G | ||
| Respiratory syncytial virus A | RSA 2bis F | GCA CAT CAT AAT TAG GAG TAT CAA T |
van Elden et al. [2003 ] |
| RSA 1 R | AGA TCA ACT TCT GTC ATC CAG CAA | ||
| RSA Pr | FAM CAC CAT CCA ACG GAG CAC AGG AGA T TAMRA | ||
| Respiratory syncytial virus B | RSB 2bis F | TGATATCCAGCATCTTTAAGTATCTTTATAGTG |
van Elden et al. [2003 ] |
| RSB 1 R | AAG ATG CAA ATC ATA AAT TCA CAG GA | ||
| RSB Pr | VIC AGG TAT GTT ATA TGC TAT GTC CAG GTT AGG AAG GGA A TAMRA | ||
| Human coronavirus 229E | COR 229 E2 F | AAA GGG CTA TAA AGA GAA TAA GGT ATT CT |
van Elden et al. [2004 ] |
| COR 229 E1 R | CAG TCA AAT GGG CTG ATG CA | ||
| COR 229 E Pr | CCC TGA CGA CCA CGT TGT GGT TCA | ||
| Human coronavirus OC43 | COR OC 43 1 F | CGA TGA GGC TAT TCC GAC TAG GT |
van Elden et al. [2004 ] |
| COR OC 43 2 R | CCT TCC TGA GCC TTC AAT ATA GTA ACC | ||
| COR OC 43 Pr | TCC GCC TGG CAC GGT ACT CCC T | ||
| Human coronavirus NL63 | hCoV‐NL63 F | CAG GGC TGA CAA GCC TTC TCA |
Tiveljung‐Lindell et al. [2009 ] |
| hCoV‐NL63 | R GCA TCA ACA CCA TTC TGA ACA AGA | ||
| hCoV‐NL63 Pr | FAM‐CGT TGG AAG CGT GTT CCT ACC AGA GAG G‐TAMRA | ||
| Human coronavirus KU1 | hCoV HKU‐1 F | CAC TTC TAT TCC CTC CGA TGT TTC |
Tiveljung‐Lindell et al. [2009 ] |
| hCoV‐HKU‐1 R | TTA GAA GCA GAC CTT CCT GAG CC | ||
| hCoV‐HKU‐1 Pr | FAM‐CGC CTG GTA CGA TTT TGC CTC AAG GCT‐TAMRA | ||
| Enterovirus | EV 1 F | CCC CTG AAT GCG GCT AAT CC |
Watkins‐Riedel et al. [2002 ] |
| EV 1 R | ATT GTC ACC ATA AGC AGC CA | ||
| Ent TM 1 Pr | FAM CAN GGA CAC CCA AAG TAG TCG GTT CC TAMRA | ||
| Parechovirus | AN345 F | GTA ACA SWW GCC TCT GGG SCC AAA AG |
Benschop et al. [2008 ] |
| AN344 R | GCC CCC WGR TCA GAT CCA YAG T | ||
| AN257 Pr | CCT RYG GGT ACC TYC WGG GCA TCC TTC | ||
| Polyomavirus KI/KU | PyV2263F | TTGGATGAAAATGGCATTGG |
Lindau et al. [2009 ] |
| PyV2404R | TAACCCTTCTTTGTCTAAARTGTAGCC | ||
| KIPyV Pr | FAM‐ACATTACTTGTGCAGATATGCTTGGAACAGC‐TAMRA | ||
| WU PyV Pr | FAM‐CATAACTTGTGCTGACCTTTTGGGAGTTAAC‐TAMRA | ||
| Parainfluenza virus 1/2/3/4 | PIV1 F | ACA GAT GAA ATT TTC AAG TGC TAC TTT AGT |
Tong et al. [2008 ] |
| PIV1 R | GCC TCT TTT AAT GCC ATA TTA TCA TTA GA | ||
| PIV1 Pr | FAM‐ATG GTA ATA AAT CGA CTC GCT‐TAMRA | ||
| PIV2 F | TGC ATG TTT TAT AAC TAC TGA TCT TGC TAA | ||
| PIV2 R | GTT CGA GCA AAA TGG ATT ATG GT | ||
| PIV2 Pr | FAM‐ACT GTC TTC AAT GGA GAT AT‐TAMRA | ||
| PIV3 F | TGC TGT TCG ATG CCA ACA A | ||
| PIV3 R | ATT TTA TGC TCC TAT CTA GTG GAA GAC A | ||
| PIV3 Pr | FAM‐TTG CTC TTG CTC CTC A‐TAMRA | ||
| PIV4 F | TGG CAA ATC GGC AAT TAA ACA | ||
| PIV4 R | GGC TCT GGC AGC AAT CAT AAG | ||
| PIV4 Pr | FAM‐TTC TGC ATT GAT GTG GCC TGT AAG GA‐TAMRA | ||
| Bocavirus | Boca NP1 F | AGA GGC TCG GGC TCA TAT CA |
Allander et al. [2007 ] |
| Boca NP1 R | CAC TTG GTC TGA GGT CTT CGA A | ||
| Boca NP1 Pr | 6FAM AGG AAC ACC CAA TCA RCC ACC TAT CGT CT TAMRA | ||
| Adenovirus | AQ1 F | GCC ACG GTG GGG TTT CTA AAC TT |
Heim et al. [2003 ] |
| AQ2 R | GCC CCA GTG GTC TTA CAT GCA CAT C | ||
| AP Pr | FAM‐TGC ACC AGA CCC GGG CTC AGG TAC TCC GA‐TAMRA | ||