Table 2.

Pathogens included in Illumina direct hybridization arrays

Bacteria	Viruses	Oral controls
Haemophilus influenzae	Metapneumovirus (hMPV)	Actinomyces gerencseriae
Streptococcus pneumoniae	Respiratory syncytial virus	Actinomyces naeslundii
Moraxella catarrhalis	Parainfluenza 1, 2, 3, 4 a/b	Streptococcus oralis
(Branhamella catarrhalis)	Influenza A virus	Candida albicans
Chlamydophila/Chlamydia pneumoniae	Influenza B virus Coronavirus	Fusobacterium nucleatum Prevotella melaninogenica
Mycoplasma pneumoniae	Adenovirus A,B,C,D,E,F	Capnocytophaga gingivalis
Legionella pneumophila Streptococcus pyogenes	Rhinovirus A, B	Clostridium difficile