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. 2019 May 31;66(5):1971–1981. doi: 10.1111/tbed.13228

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© 2019 Blackwell Verlag GmbH

This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.

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The recombination analysis of strain SWUN/SX2/2018 using SimPlot 3.5.1. A nucleotide (nt) identity plot comparing a 1,275 bp fragment of strain SWUN/SX2/2018 with BCoV strains KCD1 (GenBank accession number DQ389642) and LY138 (GenBank accession number M84486) is shown. The putative recombination region is located at the 168‐702 bp. The vertical axis indicates the similarity (%) of nucleotide sequences between the query strain and other reference strains. The horizontal axis indicates the nucleotide positions. SimPlot analysis was performed using a window size of 200 nt and step size of 20 nt (only one recombinant strain was showed due to typewritten pages requirement)