Table 2.
Nucleotide and amino acid sequence identity (%) of different regions of the PEDV HLJBY genome compared with those of the other strains
| Strain | GenBank Accession No. | Location | Date | HLJBY identity | |||
|---|---|---|---|---|---|---|---|
| genome* | S aa | ORF3 aa | |||||
| 1 | HLJBY | KP403802.1 | China | 2011 | 100.0 | 100.0 | 100.0 |
| 2 | CV777 | AF353511.1 | Swizerland | 2001 | 97.7 | 95.9 | 90.1 |
| 3 | 85–7‐C40 | KY486714.1 | China | 2017 | 97.2 | 94.7 | 71.4 |
| 4 | 85–7‐mutant1 | KX839247.1 | China | 2016 | 97.2 | 95.0 | 71.4 |
| 5 | AH2012/12 | KU646831.1 | China | 2016 | 96.8 | 92.7 | 91.2 |
| 6 | AJ1102 | JX188454.1 | China | 2012 | 97.0 | 93.1 | 91.2 |
| 7 | B5‐HB2017 | MF807952.1 | China | 2017 | 96.6 | 93.9 | 92.3 |
| 8 | BJ−2011–1 | JN825712.1 | China | 2011 | 96.9 | 92.8 | 92.3 |
| 9 | CH/FJND−3/2011 | JQ282909.1 | China | 2011 | 97.0 | 93.3 | 91.2 |
| 10 | CH/FJZZ−9/2012 | KC140102.1 | China | 2012 | 96.9 | 93.3 | 91.2 |
| 11 | CH/GDZHDM/1401 | KR153326.1 | China | 2015 | 96.8 | 93.0 | 92.3 |
| 12 | CH/GDZHDM/1401 | KX016034.1 | China | 2016 | 96.8 | 93.0 | 92.3 |
| 13 | CH/HNLH/2015 | KT199103.1 | China | 2015 | 96.7 | 93.3 | 92.3 |
| 14 | CH/HNZZ47/2016 | KX981440.1 | China | 2016 | 96.8 | 92.9 | 92.3 |
| 15 | CH/JLDH/2016 | MF346935.1 | China | 2017 | 96.8 | 93.2 | 91.2 |
| 16 | CH/JXJA/2017 | MF375374.1 | China | 2017 | 96.7 | 92.6 | 92.3 |
| 17 | CH/S | JN547228.1 | China | 2011 | 97.5 | 96.1 | 92.3 |
| 18 | CH/YNKM−8/2013 | KF761675.1 | China | 2013 | 97.0 | 93.0 | 91.2 |
| 19 | CH/ZJCX−1/2012 | KF840537.1 | China | 2013 | 96.9 | 93.1 | 92.3 |
| 20 | CHN/SH−2016−4/2016 | MG837012.1 | China | 2018 | 95.7 | 93.2 | 92.3 |
| 21 | CO/P14/IC | KU558702.1 | China | 2016 | 96.8 | 92.7 | 97.5 |
| 22 | COL/Cundinamarca/2014 from Colombia | KU569509.1 | America | 2016 | 96.8 | 92.8 | 92.3 |
| 23 | FR/001/2014 | KR011756.1 | France | 2015 | 97.1 | 95.9 | 92.3 |
| 24 | GDS23 | MH107322.1 | China | 2018 | 96.8 | 93.2 | 91.2 |
| 25 | JS‐HZ2012 | KC210147.1 | China | 2012 | 97.0 | 92.7 | 92.3 |
| 26 | LNCT2 | KT323980.1 | China | 2015 | 96.8 | 95.9 | 92.3 |
| 27 | MEX/104/2013 | KJ645708.1 | America | 2014 | 96.7 | 92.9 | 92.3 |
| 28 | NPL‐PEDv/2013 | KJ778615.1 | America | 2014 | 96.9 | 93.0 | 92.3 |
| 29 | OH8593−14 | KP641662.1 | America | 2015 | 96.7 | 92.7 | 92.3 |
| 30 | OH9097−14 | KP641663.1 | America | 2015 | 96.7 | 93.3 | 92.3 |
| 31 | OH15962 | KJ584361.1 | America | 2014 | 96.9 | 93.2 | 92.3 |
| 32 | PC21A | KR078299.1 | America | 2015 | 96.8 | 93.1 | 92.3 |
| 33 | PC22A‐P100‐C6 | KU893871.1 | America | 2016 | 96.7 | 93.1 | 92.3 |
| 34 | PC273/O | MG837058.1 | America | 2018 | 96.7 | 92.7 | 92.3 |
| 35 | PEDV 1842/2016 ITA | KY111278.1 | Italy | 2016 | 96.9 | 93.1 | 92.3 |
| 36 | PEDV/Belgorod/dom/2008 | MF577027.1 | Russia | 2017 | 91.2 | 95.7 | 92.3 |
| 37 | PEDV/MEX/PUE/01/2015 | MH004421.1 | Mexico | 2018 | 96.1 | 60.0 | 92.3 |
| 38 | PEDV/MEX/QRO/02/2017 | MH013466.1 | Mexico | 2018 | 96.0 | 92.5 | 92.3 |
| 39 | PEDV/USA/Minnesota125/2015 | KU982980.1 | America | 2016 | 96.6 | 92.8 | 91.2 |
| 40 | PEDV/USA/NorthDakota93/2015 | KU982970.1 | America | 2016 | 96.7 | 92.4 | 92.3 |
| 41 | PEDV/USA/Oklahoma133/2015 | KU982968.1 | America | 2016 | 96.6 | 93.0 | 92.3 |
| 42 | PEDV‐LNsy | KY007140.1 | China | 2016 | 96.7 | 92.6 | 92.3 |
| 43 | PEDV‐SX | KY420075.1 | China | 2017 | 99.9 | 93.0 | 98.9 |
| 44 | PEDV‐WS | KM609213.1 | China | 2014 | 96.7 | 99.9 | 92.3 |
| 45 | TC PC168‐P2 | KM392226.1 | America | 2014 | 96.8 | 93.0 | 92.3 |
| 46 | USA/2014/IL/20697 P7 | KT591944.1 | America | 2015 | 97.1 | 93.0 | 92.3 |
| 47 | USA/Colorado/2013 | KF272920.1 | America | 2013 | 96.9 | 95.8 | 92.3 |
| 48 | USA/IL20697/2014 Passage 5 | KT860508.1 | America | 2015 | 97.1 | 93.1 | 92.3 |
| 49 | USA/Illinois98/2013 | KJ645690.1 | America | 2014 | 96.7 | 95.8 | 92.3 |
| 50 | USA/Illinois259/2014 from USA | KR265785.1 | America | 2015 | 96.7 | 93.1 | 92.3 |
| 51 | USA/Indiana34/2013&America | KJ645641.1 | America | 2014 | 96.7 | 93.0 | 92.3 |
| 52 | USA/Iowa/18984/2013 | KF804028.1 | America | 2013 | 96.9 | 93.0 | 92.3 |
| 53 | USA/Kansas46/2013 | KJ645650.1 | America | 2014 | 96.7 | 93.0 | 92.3 |
| 54 | USA/Kansas431/2014 from USA | KR265819.1 | America | 2015 | 96.7 | 92.9 | 92.3 |
| 55 | USA/Minnesota76/2013 | KJ645671.1 | America | 2014 | 96.7 | 93.0 | 92.3 |
| 56 | USA/Minnesota90/2013 | KJ645682.1 | America | 2014 | 96.7 | 93.1 | 91.2 |
| 57 | USA/Missouri373/2014 from USA | KR265844.1 | America | 2015 | 96.7 | 93.0 | 92.3 |
| 58 | USA/MO/2014/03293 | KM975741.1 | America | 2014 | 97.2 | 92.3 | 92.3 |
| 59 | USA/NC/2013/35140 | KM975735.1 | America | 2014 | 96.8 | 92.7 | 92.3 |
| 60 | USA/Nebraska287/2014 from USA | KR265765.1 | America | 2015 | 96.7 | 93.0 | 92.3 |
| 61 | USA/Nebraska288/2014 from USA | KR265803.1 | America | 2015 | 96.7 | 92.9 | 92.3 |
| 62 | USA/NorthCarolina66/2013 | KJ645662.1 | America | 2014 | 96.7 | 92.8 | 92.3 |
| 63 | USA/Ohio123/2014 | KJ645699.1 | America | 2014 | 96.7 | 93.0 | 92.3 |
| 64 | USA/OK10240−8/2017 | MG334555.1 | America | 2017 | 95.1 | 93.0 | 92.3 |
| 65 | USA/Tennesse56/2013 | KJ645654.1 | America | 2014 | 96.7 | 94.7 | 92.3 |
| 66 | YN90 | KT021231.1 | China | 2015 | 96.9 | 93.0 | 91.2 |
Abbreviations: aa, Amino acid.
* Bold value indicates highest identity.
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