Table 3.
Differences in genome organization between the HLJBY strain and the CV777 strain
| Gene | HLJBY strain | CV777 strain | identity | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Start | Stop | Size (nt) | Size (aa) | Start | Stop | Size (nt) | Size (aa) | nt | aa | |
| 5'UTR | 1 | 292 | 292 | – | 1 | 296 | 296 | – | 96.0% | – |
| ORF1a/1b | 293 | 20,613 | 20,321 | 6,773 | 297 | 20,641 | 20,345 | 6,781 | 98.0% | 98.0% |
| S | 20,610 | 24,758 | 4,149 | 1,382 | 20,638 | 24,789 | 4,152 | 1,383 | 97.0% | 96.0% |
| ORF3 | 24,758 | 25,033 | 276 | 91 | 24,789 | 25,463 | 675 | 224 | 91.7% | 90.1% |
| E | 25,364 | 25,594 | 231 | 76 | 25,444 | 25,674 | 231 | 76 | 97.0% | 97.0% |
| M | 25,602 | 26,282 | 681 | 226 | 25,682 | 26,362 | 681 | 226 | 99.0% | 98.0% |
| N | 26,294 | 27,619 | 1,326 | 441 | 26,374 | 27,699 | 1,326 | 441 | 98.0% | 98.0% |
| 3ꞌUTR | 27,620 | 27,953 | 334 | – | 27,700 | 28,033 | 334 | – | 97.0% | – |
Abbreviations: aa, Amino acid; nt, Nucleotide.
This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.