Table 4.
List of gene-presenting variants, grouped by functional class. “Other” includes membrane protein, AsmA family protein, Tol-Pal system protein TolB.
| Analysis | Comparison between Longitudinal Isolates | Comparison with Reference Genome | ||||||
|---|---|---|---|---|---|---|---|---|
| Functional Category | A | B | Total | A1 | A2 | B1 | B2 | Total |
| Metabolism | 66 | 0 | 66 | 49 | 18 | 3 | 4 | 74 |
| Transcription and translation | 21 | 1 | 22 | 13 | 3 | 1 | 4 | 21 |
| Virulence, disease and defence | 5 | 0 | 5 | 2 | 4 | 0 | 0 | 6 |
| Hypothetical protein | 34 | 2 | 36 | 4 | 1 | 2 | 3 | 10 |
| Transporter | 21 | 3 | 24 | 18 | 6 | 0 | 3 | 27 |
| Iron acquisition and metabolism | 10 | 0 | 10 | 6 | 1 | 0 | 1 | 8 |
| Stress response | 2 | 0 | 2 | 1 | 1 | 0 | 0 | 2 |
| DNA repair | 2 | 0 | 2 | 0 | 3 | 0 | 0 | 3 |
| Antibiotic resistance | 7 | 0 | 7 | 5 | 3 | 0 | 0 | 8 |
| Mobile genetic elements | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Other | 3 | 0 | 3 | 4 | 0 | 0 | 0 | 4 |
| Total | 171 | 6 | 177 | 102 | 40 | 6 | 15 | 163 |