Table 4.
Detected single nucleotide polymorphisms lies in transcription factor–binding site for transcription factors in tumor necrosis factor‐alpha upstream region.
SNP ID | Position | TF | Allele 1 | Allele 2 | Conservation |
---|---|---|---|---|---|
rs5875327 | 31648480 | NRF‐2 | aGagaaagag | aCagaaagag | Yes |
rs4647194 | 31648484 | NRF‐2 | aGagaaagag | aCagaaagag | Yes |
rs2857713 | 31648535 | Thing1‐E47 | TGTGTGGCAC | TGCGTGGCAC | No |
rs1041981 | 31648763 | AML‐1 | TTTGAGGTT | TTTGAGGGT | No |
rs4647195 | 31648936 | Chop‐cEBP | CCCTGCCACCCC | CCCTGCCATCCC | No |
rs3093544 | 31649758 | Spz1 | AGAGGAAGAGC | AGAGGAAGGGC | No |
rs4645834 | 31649818 | Broad‐complex_4 | AAGGCaaaaaa | AAGTCaaaaaa | Yes |
rs3093547 | 31649827 | Hunchback | GCaaaaaaat | TCaaaaaaat | Yes |
rs4248157 | 31650122 | NF‐κB | GAGAACTTCC | GAGAACTTCT | No |
rs9282875 | 31650245 | Thing1‐E47 | AGTCTGGCGG | AGTCTGGCAG | Yes |
rs4647198 | 31650314 | COUP‐TF | TGACCCCCGCCCCT | TGACCCCCACCCCT | No |
rs2507961 | 31650433 | TBP | CTATGGAAGTCGAGT | CTATGAAAGTCGAGT | No |
rs1800630 | 31650455 | NF‐κB | GGGACCCCCA | GGGGGGTCCC | No |
rs4645836 | 31650456 | p50 | GTGGGGGTCCC | GGGGGGGTCCC | No |
rs4248158 | 31650512 | E74A | CTGGAGG | CTGGAAG | No |
rs4987086 | 31650536 | bZIP910 | GGGACAT | GGGACGT | No |
rs4248159 | 31650559 | SOX17 | CACAATGGG | CCCAGTGTG | No |
rs2857712 | 31650632 | HFH‐2 | TAATGCTGGGTT | TAATGCTGGTTT | Yes |
rs2736196 | 31650634 | HFH‐2 | TAATGCTGGGTT | TAATGCTGGTTT | Yes |
rs2736195 | 31650670 | NF‐κB | GGGCCTGCCC | AGGCCTGCCC | Yes |
rs4248160 | 31650672 | Snail | CAGGTC | CAGGCC | Yes |
rs4248162 | 31650748 | Spz1 | GGGGTAGTAGG | GGGGTAGCAGG | No |
rs2857711 | 31650750 | Spz1 | GGGGTAGTAGG | GGGGTAGCAGG | No |
rs1800195 | 31650743 | Spz1 | GGGGTAGCAGG | GGGGGAGCAGG | No |
rs3093548 | 31650799 | Myf | CCCCAGCTCCTT | AAAGAGCTGGGG | No |
rs4248163 | 31650807 | E74A | CCCGCAG | CCGGCAG | No |
rs4248164 | 31651327 | Hen‐1 | CAGCAGACGCTC | CAGCAGATGCTC | Yes |
rs4645838 | 31651391 | E74A | CTGAAAA | CCTGAAA | No |
rs2515924 | 31651470 | CREB | GAGGGTGAAGCC | GAGGGTGGAGCC | No |
rs2228088 | 31651584 | Myf | AAGCACCGCCTG | AAGCAACGCCTG | Yes |
rs4645839 | 31651804 | ARNT | aAcgtg | aTcgtg | No |
rs1800610 | 31651806 | ARNT | aAcgtg | aTcgtg | No |