Table 5.
Results from testing a panel of field samples using S1 genotyping method. The results show the closest sequence in the S1 sequence database, along with the number of mismatches between the sample sequence and the closest match within the database for the 140‐bp region compared
| Sample name | Sample type | Closest sequence match in library | Number of mismatches |
|---|---|---|---|
| AS67 | Swab | D274 | 1 |
| AS68 | Trachea | UK/L‐633/04 | 0 |
| AS48 | Throat swab | 4/91 Pathogenic | 1 |
| AS50 | Trachea | 4/91 Pathogenic | 2 |
| AS87 | Trachea and kidney | 4/91 Pathogenic | 0 |
| AS85 | Caecal tonsils | 4/91 Pathogenic | 2 |
| S1FS10 | Trachea | QX (AV2150/107) | 2 |
| S1FS84 | Oropharyngeal swab | FR/L‐1450T/05 | 2 |
| S1FS85 | Oropharyngeal swab | NL/L‐1449T/04 | 2 |
| S1FS31 | Oropharyngeal swab | 4/91 Pathogenic | 0 |