Table 2.
The HB‐BD isolate strain and other reference strains of PDCoV and other coronaviruses used for sequence alignment and phylogenetic analysis
| Strain | Location and temporal information | Accession no. |
|---|---|---|
| PDCoV/HB‐BD‐complete genome | China | MF948005 |
| PDCoV/HB‐BD‐M gene | China | KY129985 |
| PDCoV/HB‐BD‐N gene | China | KY129986 |
| PDCoV/HB‐BD‐S gene | China | MF037204 |
| CHN‐JS‐2014 | China | KP757892 |
| CH‐HB‐2014 | China | KP757891 |
| CH/SXD1/2015 | China | KT021234 |
| PDCoV/NH | China | KU981059 |
| CHN‐Tianjin | China | KY065120 |
| CH/Sichuan/S27/2012 | China | KT266822 |
| CHN‐AH‐2004 | China | KP757890 |
| HKU15‐155 | China | JQ065043 |
| HKU15‐44 | China | JQ065042 |
| PDCoV/CHJXNI2/2015 | China | KR131621 |
| OH11846 | USA | KT381613 |
| OH1978 | USA | KJ462462 |
| PA3148 | USA | KJ584358 |
| IL2768 | USA | KJ584355 |
| NE3579 | USA | KJ584359 |
| MI6148 | USA | KJ620016 |
| IN2847 | USA | KJ569769 |
| SD3424 | USA | KJ584356 |
| KY4813 | USA | KJ584357 |
| OhioCVM1/2014 | USA | KJ769231 |
| 8734/USA‐IA/2014 | USA | KJ567050 |
| PDCoV/USA/lllinois133/2014 | USA | KJ601777 |
| PDCoV/USA/lllinois136/2014 | USA | KJ601779 |
| PDCoV/USA/lllinois134/2014 | USA | KJ601778 |
| PDCoV/USA/lllinois121/2014 | USA | KJ481931 |
| KNU14‐04 | Korea | KM820765 |
| PDCoV/Swine/Thailand/S5011/2015 | Thailand | KU051641 |
| PDCoV/Swine/Thailand/S5015L/2015 | Thailand | KU051649 |
| PEDV/CH/JX‐1/2013 | China | KF760557 |
| PEDV/CV777 | Belgium | AF353511 |
| PEDV/OH1414 | USA | KJ408801 |
| TGEV H16 | China | FJ755618 |
| TGEV‐virulent‐Purdue | USA | DQ811789 |
PDCoV, porcine deltacoronavirus.
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