Figure 4.

Phylogenetic analysis of ‘Ca. Liberibacter asiaticus’ (Las) isolates. Maximum‐likelihood phylogeny of Las based on core orthologous genes. In total, 765 orthologous genes were concatenated, and a maximum‐likelihood approach was used to generate the phylogeny with 1,000 bootstrap replicates. ‘Ca. Liberibacter africanus’ isolate PTSAPSY was used as the outgroup. Bootstrap values are indicated at each node. On the right are the locations where each isolate was collected and the prophages present in these isolates. The resulting phylogeny was visualized using FigTree v. 1.4.3 (Rambaut, 2012)