Table 1.
Genome Location (hg19) | SNP ID | Ref | Alt | No. of carriers identified | QUAL score | MAF (gnomAD) | Functional effect | DNA change | Amino acid change |
---|---|---|---|---|---|---|---|---|---|
chr1:215956104 | rs111033264 | A | G | 1 | 24.8 | 2.889E-07 | Missense | c.10561T > C | p.Trp3521Arg |
chr1:215963510 | rs148660051 | C | T | 4 | 247 | 0.000003829 | Missense | c.10073G > A | p.Cys3358Tyr |
chr1:216019240 | rs397518041 | C | T | 1 | 46.4 | 0.00001627 | Stop-Gain | c.8981G> A | p.Trp2994* |
chr1:216420436 | rs80338903 | C | – | 7 | 967 | 0.0006835 | Frameshift | c.2299delG | p.Glu767Serfs |
chr1:216497582 | rs121912600 | C | A | 1 | 171 | 0.00004079 | Missense | c.1256G > T | p.Cys419Phe |
Genome location is given in the format chr:variant position (hg19). QUAL score refers to PHRED quality score for sequence data at given base. Ref is the allele observed in the Human Reference sequence (hg19). Alt is the alternative allele observed in the UK10K. All variants were observed in a heterozygous form. Minor Allele Frequency (MAF) is given for all samples in the gnomAD population database (https://gnomad.broadinstitute.org/). DNA change refers to the position in the coding sequence for the gene. Amino acid change refers to the position altered in the protein.