Table 3.
The Detailed Classification of Repeat Sequences for Male O. fasciatus
| Type | Repbase TEs |
TE Proteins |
De Novo |
Combined TEs |
||||
|---|---|---|---|---|---|---|---|---|
| Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | |
| DNA | 39,085,328 | 4.92 | 5,858,619 | 0.74 | 83,843,085 | 10.55 | 115,535,672 | 14.53 |
| LINE | 24,759,524 | 3.11 | 17,460,721 | 2.20 | 56,286,293 | 7.08 | 85,210,163 | 10.72 |
| SINE | 889,332 | 0.11 | 0 | 0.00 | 1,986,947 | 0.25 | 2,817,685 | 0.35 |
| LTR | 10,536,213 | 1.33 | 6,615,817 | 0.83 | 32,670,415 | 4.11 | 44,682,943 | 5.62 |
| Satellite | 1,910,832 | 0.24 | 0 | 0.00 | 733,763 | 0.09 | 2,480,580 | 0.31 |
| Simple_repeat | 1,304,732 | 0.16 | 0 | 0.00 | 7,478,505 | 0.94 | 8,578,237 | 1.08 |
| Other | 6,957 | 0.00 | 171 | 0.00 | 0 | 0.00 | 7,128 | 0.00 |
| Unknown | 338,847 | 0.04 | 0 | 0.00 | 30,384,129 | 3.82 | 30,719,924 | 3.86 |
| Total | 74,440,379 | 9.36 | 29,922,429 | 3.76 | 184,141,930 | 23.16 | 252,879,666 | 31.81 |