Table 3.
List of significant markers associated with multiple phenotypic traits (pleiotropy) in the SWAMP
| SNP | Trait | Dataset | -log10(p) | Effect | PVE |
|---|---|---|---|---|---|
| S1D_479711964 | NDVIa | BLUEA | 5.26 | 0.00 | 0.20 |
| NDVIa | BLUEC | 5.52 | 0.01 | 0.23 | |
| NDVIg | BLUEA | 3.40 | 0.01 | 0.16 | |
| S2B_466014434 | MT | BLUEC | 3.31 | −4.85 | 0.06 |
| SPAD | BLUEA | 3.83 | −1.89 | 0.20 | |
| SPAD | BLUEC | 3.34 | −1.91 | 0.16 | |
| S3A_609909640 | CT | BLUEC | 4.11 | −0.20 | 0.11 |
| SPAD | BLUEQ | 4.51 | 1.78 | 0.16 | |
| S3B_785311769 | NDVIa | BLUEC | 6.02 | 0.00 | 0.22 |
| NDVIg | BLUEA | 3.01 | 0.01 | 0.13 | |
| NDVIg | BLUEQ | 3.34 | 0.01 | 0.07 | |
| S5A_356222133 | NDVIa | BLUEQ | 3.26 | 0.01 | 0.11 |
| NDVIg | BLUEQ | 3.02 | 0.02 | 0.08 | |
| S5A_356222163 | NDVIa | BLUEQ | 3.26 | 0.01 | 0.11 |
| NDVIg | BLUEQ | 3.02 | 0.02 | 0.08 | |
| S5A_590056740 | NDVIa | BLUEA | 5.79 | −0.01 | 0.18 |
| NDVIg | BLUEA | 3.10 | −0.02 | 0.13 | |
| S6A_39961388 | NDVIa | BLUEC | 3.12 | 0.01 | 0.22 |
| NDVIg | BLUEA | 3.66 | 0.02 | 0.17 | |
| S7B_701649275 | NDVIa | BLUEA | 5.82 | 0.00 | 0.20 |
| NDVIg | BLUEA | 3.78 | 0.01 | 0.15 | |
| S7D_635578722 | NDVIa | BLUEA | 3.49 | 0.01 | 0.18 |
| NDVIa | BLUEQ | 3.34 | 0.02 | 0.09 | |
| NDVIg | BLUEA | 3.15 | 0.03 | 0.15 | |
| NDVIg | BLUEC | 4.17 | 0.02 | 0.11 | |
| SPAD | BLUEQ | 3.41 | −3.40 | 0.15 |
SPAD, soil-plant analyses development; MT, cell membrane thermostability (%); CT, canopy temperature (°C); NDVIa, normalized difference vegetation index at GS65; NDVIg, normalized difference vegetation index at grain filling. BLUEC, BLUEs values derived across Citra; BLUEQ, BLUEs values derived across Quincy, and BLUEA: BLUEs values derived across all environment