Table 1.
Identification of putative new viral species within small resistant non-enveloped virus families.
| Family | Main species (# contigs) | Main GIa (# contigs with best hit for this GI) | # contigsb with best hit to this species | Number of reads in contigs | Average contig nucleotidic identity (%) | Average contig length | Average contig match length | Longest contig datac (length/match/nucleotidic identity) | Longest match datad (length/match/nucleotidic identity) | # singletonse | Average singleton nucleotidic identity (%) | Total number of readsf |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Astroviridae | Porcine astrovirus 5 (16) | 354682131 (9) | 34 | 308 | 82.78 | 178 | 105 | 338/95/92.63 | 291/240/78.33 | 24 | 82.13 | 332 |
| Caliciviridae | California sea lion sapovirus 1 (1) | 557357608 (1) | 3 | 30 | 79.42 | 247 | 139 | 350/206/84.95 | 350/206/84.95 | 5 | 83.09 | 35 |
| Circoviridae | Po-Circo-like virus 41 (40) | 354682166 (40) | 64 | 3047 | 49.42 | 291 | 201 | 944/297/39.39 | 516/543/34.81 | 22 | 82.91 | 3069 |
| Parvoviridae | Eidolon helvum parvovirus 2 (34) | 505580618 (32) | 182 | 51432 | 64.47 | 202 | 141 | 733/392/58.67 | 392/392/82.91 | 728 | 80.77 | 52160 |
| Reoviridae | Rotavirus F (46) | 388542459 (10) | 69 | 784 | 69.58 | 227 | 161 | 549/384/31.25 | 549/384/31.25 | 131 | 78.01 | 915 |
a
Unique identifiers for the sequence data in the NCBI database.
b
A sequence derived from a set of single overlapping reads.
c
Length of the longest contig, length of the match with the target sequence and % of identity of the match.
d
Length of the contig that includes the longest match, length of the match with the target sequence and % of identity of the match.
e
Reads that cannot be assembled in contigs.
f
Total number of reads singletons or assembled in contigs.