Table 3.
Most potential 5 T-cell epitopes with interacting MHC-1 alleles, total processing score and epitope conservancy result.
Epitope | Interacting MHC-1 allele with an affinity, 200 (total score of proteasome score, TAP score, MHC score, processing score and MHC-1 binding) | Epitope conservancy analysis result |
---|---|---|
VTNHKKWQY | HLA-A*68:23 (2.02) HLA-A*32:07 (1.36) HLA-C*05:01 (1.16) HLA-C*12:03 (1.10) HLA-B*27:20 (0.87) HLA-A*30:02 (0.67) HLA-A*32:15 (0.64) HLA-B*15:17(0.55) HLA-A*80:01(0.45) |
37.29% |
STKDNFNVY | HLA-A*68:23 (2.52) HLA-C*12:03 (2.16) HLA-A*32:07 (1.55) HLA-B*15:01 (1.03) HLA-A*32:15 (0.98) HLA-C*03:03 (0.93) HLA-A*30:02 (0.81) HLA-A*26:02 (0.80) HLA-B*15:02 (0.76) HLA-B*40:13 (0.73) HLA-C*14:02 (0.63) HLA-B*15:17 (0.59) |
45.76% |
VMHKKEVVL | HLA-B*27:20 (1.17) HLA-A*02:50 (0.95) HLA-B*40:13 (0.86) HLA-A*32:07 (0.86) HLA-A*02:11 (0.82) HLA-A*68:23 (0.50) HLA-B*15:03 (0.49) HLA-C*14:02 (0.46) HLA-A*02:12 (0.27) HLA-C*03:03 (0.12) HLA-A*02:16 (−0.11) HLA-C*12:03 (−0.13) |
66.10% |
LYPDHPTLL | HLA-A*02:17 (0.94) HLA-C*14:02 (0.90) HLA-A*32:07 (0.80) HLA-A*02:50 (0.64) HLA-A*68:23 (0.45) HLA-A*24:03 (0.36) HLA-C*12:03 (0.22) HLA-B*40:13 (0.14) HLA-B*15:02 (0.01) HLA-C*06:02 (−0.11) HLA-A*24:02 (−0.26) HLA-B*27:20 (−0.27) |
68.88% |
YYYELYPTM | HLA-C*14:02 (1.31) HLA-A*02:17 (0.75) HLA-A*24:03 (0.44) HLA-C*07:02 (0.32) HLA-A*32:07 (0.21) HLA-A*68:23 (0.19) HLA-C*03:03 (0.12) HLA-B*27:20 (0.04) HLA-C*12:03 (−0.07) HLA-B*42:01 (−0.30) HLA-A*24:02 (−0.54) HLA-A*23:01 (−0.60) HLA-B*15:03 (−0.67) HLA-B*15:02 (−0.68) HLA-C*06:02 (−0.87) HLA-A*02:11 (−0.89) HLA-A*32:15 (−0.89) HLA-B*35:01 (−0.94) HLA-A*02:50 (−0.95) |
69.49% |