Table 2.
Nucleotide length, melting temperature (Tm) and GC content of the probes and primers used in quantitative real-time RT-PCR
Specificity | Start (nt) | End (nt) | Length | Tm (°C) | %GC | |
---|---|---|---|---|---|---|
CymMV RdRp | TaqMan probe | 1215 | 1238 | 24 | 69 | 58 |
Forward primer | 1191 | 1213 | 23 | 59 | 43 | |
Reverse primer | 1265 | 1287 | 23 | 59 | 43 | |
CymMV CP | TaqMan probe | 5600 | 5625 | 26 | 69 | 50 |
Forward primer | 5580 | 5597 | 18 | 60 | 61 | |
Reverse primer | 5649 | 5668 | 20 | 58 | 50 | |
ORSV RdRp | TaqMan probe | 120 | 149 | 30 | 68 | 43 |
Forward primer | 100 | 118 | 19 | 58 | 58 | |
Reverse primer | 173 | 195 | 23 | 58 | 43 | |
ORSV CP | TaqMan probe | 5817 | 5841 | 25 | 70 | 56 |
Forward primer | 5793 | 5815 | 23 | 58 | 43 | |
Reverse primer | 5866 | 5882 | 17 | 58 | 65 |