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. 2011 Feb 22;173(2):259–265. doi: 10.1016/j.jviromet.2011.02.014

Table 1.

Primer and probe sequences designed for detection of the C823T mutation. The SNP position is highlighted in bold and underlined.

Assay Oligonucleotide name Oligonucleotide sequence (5′–3′) Amplicon (bp) Locationa Source
Sequencing (Partial NA) NA675F_nested_sw AACACAAGAGTCTGAATGTGC 415 675–695 In-house
NA1089R_nested_sw ACCGTTTCTTGAACTAATGCTT 1089–1110



Real-time RT-PCR SOIV_NA_781F GGAAAGATAGTCAAATCAGTCGAAATG 781–807 In-house
SOIV_NA_878R CTGCACACACATGTGATTTCACTAG 98 854–878
SOIV_Osel_SEN FAM – CCTCATAGTGATAATTA – MGB 816–832
SOIV_Osel_RES VIC – CCTCATAGTAATAATTAG – MGB 815–832
a

Nucleotide numbering is based on the neuraminidase (NA) gene of influenza A virus (A/California/04/2009(H1N1), GenBank accession no. GQ117044).