Table 1.

Metagenomic sequencing identified HEV-C104 in each tested sample.

	Throat week 16	Throat week 17	Throat week 18	Throat week 22	Nasal week 22	Stool week 22
Total reads	9,560,297	9,292,252	6,183,486	5,778,571	2,315,153	2,032,088
Virus reads	3,609,488	5,006,695	3,225,654	768,747	1,088,595	123,937
Virus reads (%)	37.8	53.9	52.2	13.3	47.0	6.1
HEV-C104 reads	3,576,982	4,998,690	3,219,925	768,092	1,087,656	181
HEV-C104 within virus reads (%)	99.1	99.8	99.8	99.9	99.9	0.1
TTV reads	28,125	16	774	0	495	5
KIPyV reads	5	6054	2002	1	9	0
HERVa reads	215	16	65	0	28	0
Bacteriophage reads	0	0	9	584b	22c	38b
Pepino mosaic virus reads	0	0	0	55	71	123,688

^aStrains K113, HCML-ARV, and K115.

^bEnterococcus phages, Lactobacillus phages, and Staphylococcus phages.

^cStaphylococcus phages.