Table 1.
Details of 34 Polish field IBV strains used in this study.
| No | Isolate name | Chicken type | Age (days) | Symptoms | Lineage | Genbank Noa |
|---|---|---|---|---|---|---|
| 1 | gammaCoV/AvCoV/ck/Poland/01/1980 | Layer | n/a | ovary dysfunction | GI-1 | KT886443 |
| 2 | gammaCoV/AvCoV/ck/Poland/78/1989 | Broiler | 21 | respiratory | GI-1 | MK581200a |
| 3 | gammaCoV/AvCoV/ck/Poland/79/1989 | Broiler | n/a | respiratory | GI-1 | MK581201a |
| 4 | gammaCoV/AvCoV/ck/Poland/80/1989 | Broiler | 49 | respiratory | Unique variant | MK581202a |
| 5 | gammaCoV/AvCoV/ck/Poland/81/1989 | Broiler | 63 | respiratory | Recombinant | KT886445 |
| 6 | gammaCoV/AvCoV/ck/Poland/162/1997 | Broiler | 21 | respiratory, enteric, nephritis | Unique variant | MK581203a |
| 7 | gammaCoV/AvCoV/ck/Poland/255/1997 | Broiler | 28 | enteric, nephritis | GI-13 | MK581204a |
| 8 | gammaCoV/AvCoV/ck/Poland/58/1998 | Broiler | 14 | respiratory, enteric, nephritis | GI-13 | KT886449 |
| 9 | gammaCoV/AvCoV/ck/Poland/338/2004 | Broiler | 36 | nephritis | GI-13 | KT886450 |
| 10 | gammaCoV/AvCoV/ck/Poland/548/2004 | Broiler | 10 | enteric/respiratory | GI-19 | MK581205a |
| 11 | gammaCoV/AvCoV/ck/Poland/29/2005 | Broiler | 24 | nephritis | GI-19 | KT886437 |
| 12 | gammaCoV/AvCoV/ck/Poland/217/2005 | Broiler | 35 | respiratory | GI-13 | KT886451 |
| 13 | gammaCoV/AvCoV/ck/Poland/14/2006 | Broiler | 28 | nephritis | GI-19 | KT886438 |
| 14 | gammaCoV/AvCoV/ck/Poland/1387/2006 | Broiler | 42 | nephritis | GI-19 | KT886439 |
| 15 | gammaCoV/AvCoV/ck/Poland/1612/2006 | Broiler | 21 | nephritis | GI-19 | KT886440 |
| 16 | gammaCoV/AvCoV/ck/Poland/G074/2009 | Broiler | n/a | respiratory, nephritis | GI-19 | KT886454a |
| 17 | gammaCoV/AvCoV/ck/Poland/G018/2010 | Layer | 53 | nephritis | GI-13 | KT886452 |
| 18 | gammaCoV/AvCoV/ck/Poland/G024/2010 | Broiler | 32 | nephritis | GI-19 | KT886441 |
| 19 | gammaCoV/AvCoV/ck/Poland/G033/2011 | Broiler | 14 | nephritis | GI-19 | KT886442 |
| 20 | gammaCoV/AvCoV/ck/Poland/G034/2011 | Broiler | n/a | nephritis | GI-1 | KT886446 |
| 21 | gammaCoV/AvCoV/ck/Poland/G049/2012 | Broiler | 41 | n/a | GI-13 | MK576135 |
| 22 | gammaCoV/AvCoV/ck/Poland/G195/2012 | Broiler | 40 | nephritis | GI-19 | MK581206a |
| 23 | gammaCoV/AvCoV/ck/Poland/G021/2013 | Broiler | 24 | respiratory, poor growth | GI-13 | MK576136 |
| 24 | gammaCoV/AvCoV/ck/Poland/G019/2014 | N/a | 21 | n/a | GI-19 | MK576137 |
| 25 | gammaCoV/AvCoV/ck/Poland/G193/2015 | N/a | n/a | poor growth, nephrtitis | GI-13 | MK576138 |
| 26 | gammaCoV/AvCoV/ck/Poland/G029/2016 | Broiler | 42 | respiratory, nephritis | GI-23 | MK576140 |
| 27 | gammaCoV/AvCoV/ck/Poland/G101/2016 | Broiler | 35 | n/a | GI-23 | MK576139 |
| 28 | gammaCoV/AvCoV/ck/Poland/G103/2016 | Broiler | 39 | nephritis | GI-23 | MK581207a |
| 29 | gammaCoV/AvCoV/ck/Poland/G264/2016 | Broiler | 10 | nephritis | GI-23 | MK576141 |
| 30 | gammaCoV/AvCoV/ck/Poland/G004/2017 | Broiler | 38 | nephritis | GI-23 | MK576142 |
| 31 | gammaCoV/AvCoV/ck/Poland/G225/2017 | Broiler | n/a | n/a | GI-23 | MK581208a |
| 32 | gammaCoV/AvCoV/ck/Poland/G242/2017 | N/a | 70 | respiratory, nephritis | GI-23 | MK576143 |
| 33 | gammaCoV/AvCoV/ck/Poland/G269/2017 | Broiler | 217 | n/a | GI-23 | MK576144 |
| 34 | gammaCoV/AvCoV/ck/Poland/G326/2017 | Broiler | 42 | n/a | GI-12 | MK576145 |
a
Means the nearly whole genome sequence deposited.