Table 1.
Primer and probe sequences of assays.
| Target | Primers | Probe with reporter dye | Reference |
|---|---|---|---|
| Alternative astrovirus |
F-TCT YAT AGA CCG YAT TAT TGG R- TCA AAT TCT ACA TCA TCA CCA A |
ROX – CCC CAD CCA TCA TCA TCT TCA TCA | van Maarseveen |
| Original astrovirus |
F-CCG AGT AGG ATC GAG GGT R-GCT TCT GAT TAA ATC AAT TTT AA |
FAM-CTT TTC TGT CTC TGT TTA GAT TAT TTT AAT CAC C | Le Cann |
| adenovirus |
F-GCC ACG GTG GGG TTT CTA AAC TT R-GCC CCA GTG GTC TTA CAT GCA CAT C |
Atto647 TGC ACC AGA CCC GGG CTC AGG TAC TCC GA | Heim |
| Alternative rotavirus |
F- ACC ATC TWC ACG TRA CCC TC R- CAC ATA ACG CCC CTA TAG CC |
HEX- ATG AGC ACA ATA GTT AAA AGC TAA CAC TGT CAA | van Maarseveen (adapted Pang) |
| Original rotavirus |
F- ACC ATC TAC ACA TGA CCC TC R- GGT CAC ATA ACG CCC C |
FAM-ATG AGC ACA ATA GTT AAA AGC TAA CAC TGT CAA | Pang |
| sapovirus |
F- CAG GCT CTC GCC ACC TAC R- CCC TCC ATY TCA AAC ACT AWT TT |
FAM- TGG TTC ATA GGT GGT RC-MGB | van Maarseveen |
F: forward; R: reverse.