TABLE 7.7.
Expression strategies of (+)-strand ssRNA plant viruses
Family | Genus | Termini | Expression strategies |
||||
---|---|---|---|---|---|---|---|
5’ | 3’ | Genome segments | Sub-genomic | Read- Frame-through shift | Proteolytic Other cleavage | ||
Bromoviridae | Broinovirus | Capa | t | 3 | 1 | ||
Alfamovirus | Cap | c | 3 | 1 | |||
Cucumovirus | Cap | t | 3 | 1 | |||
Ilarvirus | Cap | c | 3 | 1 | |||
Oleavirus | Cap | c | 3 | 1 | |||
Comoviridae | Comovirus | VPg | An | 2 | + 2-startb | ||
Fabavirus | ?VPg | An | 2 | + | |||
Nepovirus | VPg | An | 2 | + | |||
Potyviridae | Potyvirus | VPg | An | 1 | + | ||
Ipomovirus | ?VPg | An | 1 | + | |||
Macluravirus | ?VPg | An | 1 | + | |||
Rymovirus | ?VPg | An | 1 | ?+ | |||
Tritimovirus | ?VPg | An | 1 | + | |||
Bymovirus | ?VPg | An | 2 | + | |||
Tombusviridae | Tombusvirus | OH | 1 | 2 | + | ||
Avenavirus | OH | 1 | 1 | + | |||
Aureusvirus | OH | 1 | 2 | + | |||
Carmovirus | OH | 1 | 2 | + | |||
Dianthovirus | Cap | OH | 2 | 1 | −1 | ||
Machlomovirus | Cap | OH | 1 | + | + 2 | 2-start | |
Necrovirus | OH | 1 | 2 | + | |||
Panicovirus | OH | 1 | 1 | + −1 | |||
Sequiviridae | Sequivirus | ?VPg | An | 1 | + | ||
Waikavirus | ?VPg | An | 1 | + | |||
Closteroviridae | Closterovirus | ?Cap | OH | 1 | 7–10 | + 1 | + |
Crinivirus | ?Cap | OH | 2 | + | + 1 | ||
Luteoviridae | Luteovirus | OH | 1 | + | + + | ||
Polerovirus | VPg | OH | 1 | + | + + | ||
Enamovirus | VPg | OH | 1 | + | + + | ||
No family | Tobamovirus | Cap | t | 1 | 2 | + | |
Tobravirus | Cap | OH | 2 | + | + | ||
Potexvirus | Cap | 1 | 2 | ||||
Carlavirus | ?Cap | An | 1 | 2 | |||
Allexivirus | ?Cap | An | 1 | + | |||
Capillovirus | ?Cap | An | 1 | 2 | |||
Fovcavirus | Cap | An | 1 | + | |||
Trichovirus | Cap | An | 1 | 2 | |||
Vitivirus | Cap | ||||||
Furovirus | Cap | t | 2 | + | + | ||
Pecluvirus | ?Cap | 2 | + | + | |||
Pomovirus | Cap | t | 3 | + | + | ||
Benyvirus | Cap | An | 4 | + | + | + 2-start | |
Hordeivirus | Cap | t | 3 | + | |||
Sobemovirus | VPg | 1 | + | + CfMV | + | ||
Marafivirus | Cap | 1 | + | + | |||
Tymovirus | Cap | t | 1 | 1 | + 2-start | ||
Ourmiavirus | 3 | ||||||
Umbravirus | OH | 1 | + | + |
An = poly(A); c = conserved 3’ sequence between genome segments; Cap = cap sequence; OH = hydroxyl 3’ terminus; t = tRNA-like sequence; VPg = genomic viral protein.
Two translational starts on same ORF.