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. 2020 Apr 21;9:e54462. doi: 10.7554/eLife.54462

Figure 6. Evidence for the use of shared variation on Super-Scaffold 73.

Figure 6.

(a) A rooted extended majority rule consensus tree summarizing maximum likelihood (ML) trees constructed for all scaffolds in the blackcap reference genome (96 scaffolds). Node numbers indicate the number of scaffolds in which populations were partitioned into two sets. (b) A ML tree constructed for the region on Super-Scaffold 73 with migratory garden warbler more closely related to blackcaps and medium-distance NW birds occurring at the base of this clade in Figure 4b. Nodes with bootstrap values <80 are collapsed; nodes without numbers have support values of 100. (c) The site frequency spectrum (SFS) for the region on Super-Scaffold 73 (red) compared to SFSs for 1000 random sequences from the genome (varying shades of gray).