Table 3.
Primers used in this study.
| Name | Sequences (5′-3′) | Annealing Temp | Extension time | Cycle no. |
|---|---|---|---|---|
| PCR (gDNA amplification) | ||||
|
intron 1F exon 2R |
cagtctagacagcagggcaa agtaggatgtgccccaggag |
55 °C | 1 min | 35 |
|
exon 16F exon 20R |
caaggactctagcacctgg gaatctcccaagtcctgtga |
60 °C | 3 min | 34 |
|
intron 14F exon 15R |
catgctgggtggctgagaa ctcctcgtgtgtactacggc |
60 °C | 1 min | 28 |
|
intron 5F intron 8R |
cagagccctccaagtgaaga ttccaggaccaggtgacatc |
60 °C | 1 min | 30 |
|
exon 10F intron 12R |
actgccttccccgacttca ggagctttctgggatgag |
60 °C | 5 min | 34 |
| RT-PCR (GAA transcript amplification) | ||||
|
exon 1F exon 5R |
ggaaactgaggcacggagcg ggaccacatccatggcattgc |
60 °C | 2 min | 34 |
|
exon 4F exon 10R |
gtatatcacaggcctcgccg ctggtcatggaactcagcca |
60 °C | 2 min | 34 |
|
exon 9F exon 17R |
gggggttttcatcaccaacga ctgccaagggcctctactgg |
60 °C | 2 min | 34 |
|
exon 16F exon 20R |
caaggactctagcacctgg gaatctcccaagtcctgtga |
60 °C | 2 min | 34 |
|
exon 4F exon 19R |
gtatatcacaggcctcgccg gaagttggagacagggacacc |
60 °C | 3 min | 35 |
| qPCR | ||||
|
GAA transcript (exon 1-2), amplification exon 1F(q) exon 1-2R(q) |
tgggaaagctgaggttgtcg tcctacaggcccgctcc |
Refer to Methods | ||
|
TBP transcript (exon 1-2), amplification exon 1-2F(q) exon 2R(q) |
tctttgcagtgacccagcatcac cctagagcatctccagcacactct |
|||