TABLE 3.
Long read PacBio sequencing generated a highly contiguous Phytophthora fragariae BC-16 (UK2) reference genome.
| Phytophthora fragariae | Phytophthora sojae | |
| BC-16 | P6497 | |
| Assembly size (Mb) | 90.97 | 82.60 |
| Number of contigs | 180 | 862 |
| N50 (kb) | 923.5 | 386.0 |
| L50 | 33 | 61 |
| Repeatmasked | 38% | 29% |
| Genes | 37,049 (41,103) | 26,584 |
| RxLRs | 486 (1,052) | 350 |
| CRNs | 82 (85) | 40 |
| Apoplastic effectors | 1,274 (4,757) | N/A |
Assembly and annotation statistics compared to Phytophthora sojae P6497 (Tyler et al., 2006). Values in brackets include low confidence gene models from open reading frames.