TABLE 3.

Relative expression levels of 23 genes affected by SoxR G121P in response to doxycycline

Gene	Name of gene product	Fold change in expression determined by:
		RNA-seq	Real-time qPCR
rpsR	30S ribosomal subunit protein S18	−25.93	−166.96
rplD	50S ribosomal subunit protein L4	−20.44	−85.04
rpsF	30S ribosomal subunit protein S6	−18.45	−156.14
rpsC	30S ribosomal subunit protein S3	−16.13	−9.04
rpsQ	30S ribosomal subunit protein S17	−8.16	−83.87
rpsB	30S ribosomal subunit protein S2	−6.59	−60.13
rplE	50S ribosomal subunit protein L5	−3.90	−23.53
fbaB	Fructose-bisphosphate aldolase class I	106.86	15.60
pgi	Phosphohexose isomerase	10.24	1.24
pfkA	6-Phosphofructokinase I	−44.20	−2,586.29
aceE	Pyruvate dehydrogenase	−3.82	−20.16
talA	Transaldolase A	80.72	13.06
tktB	Transketolase B	60.17	11.82
fumC	Fumarate hydratase	76.81	7.52
sucD	Succinyl-CoA synthetase	17.50	1.75
acnA	Aconitate hydratase	17.49	2.44
sucA	2-Oxoglutarate decarboxylase	14.18	1.69
mqo	Malate dehydrogenase	−15.55	−7.78
aceA	Isocitrate lyase	13.08	1.47
aceB	Malate synthase A	12.00	1.53
ndh	NADH dehydrogenase II	−3.66	−4.82
gadB	Glutamate decarboxylase	873.93	33.98
gadA	Glutamate decarboxylase	355.04	8.22