TABLE 4.

Relative expression levels of 21 genes affected by CRP V140W in response to gentamicin

Gene	Name of gene product	Fold change in expression determined by:
		RNA-seq	Real-time qPCR
flgB	Flagellar basal body rod protein	−308.10	−747.88
fliA	RNA polymerase sigma factor for flagellar operon	−213.54	−429.55
motA	Chemotaxis protein	−138.11	−592.22
motB	Chemotaxis protein	−74.83	−342.51
flhD	Flagellar class II regulon transcriptional activator	−19.34	−75.41
flhC	Flagellar class II regulon transcriptional activator	−13.43	−92.20
tar	Methyl-accepting chemotaxis protein II	−164.92	−403.57
cheA	Two-component system, chemotaxis family, sensor kinase	−44.62	−327.04
pdeH	Cyclic-di-GMP phosphodiesterase	−107.17	−367.94
flu	CP4-44 prophage antigen 43 phase-variable biofilm formation autotransporter	−12.74	−45.78
leuB	3-Isopropylmalate dehydrogenase	41.74	1.64
leuA	2-Isopropylmalate synthase	40.36	1.31
serC	3-Phosphoserine/phosphohydroxythreonine aminotransferase	8.28	1.30
tdcB	l-Threonine dehydratase	−448.77	−11,036.54
fadB	3-Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase/enoyl-CoA isomerase	−21.58	−167.73
yqeF	Beta-ketoacyl-CoA thiolase	−6.72	−52.35
tktB	Transketolase B	36.99	3.46
talA	Transaldolase A	28.78	5.46
pfkA	6-Phosphofructokinase I	−89.48	−8,079.22
sdhC	Succinate dehydrogenase	−27.10	−307.26
mqo	Malate dehydrogenase	−6.49	−73.18