Table 2.
Genes Expressed at Higher Levels in the SPT Mutant versus the Parent Strain W83.
| Name | Gene ID | Product | Q Value | Fold Change |
|---|---|---|---|---|
| Type IX secretion system | ||||
| — | PG0027 | Hypothetical protein | 1.81E-28 | 2.83 |
| porP | PG0287 | Hypothetical protein porP | 3.33E-56 | 2.58 |
| porK | PG0288 | Putative lipoprotein porK | 1.24E-32 | 2.65 |
| porL | PG0289 | Hypothetical protein porL | 1.14E-40 | 2.56 |
| porM | PG0290 | Hypothetical protein porM | 8.78E-20 | 2.21 |
| porN | PG0291 | Hypothetical protein porN | 2.53E-29 | 2.58 |
| porT | PG0751 | porT protein | 8.54E-30 | 2.00 |
| sov | PG0809 | Hypothetical protein | 3.61E-10 | 2.10 |
| PG0810 | Hypothetical protein | 4.20E-55 | 2.60 | |
| tpr | PG1055 | Thiol protease | 0 | 8.00 |
| — | PG1947 | Hypothetical protein | 1.48E-17 | 2.00 |
| TapA | PG2100 | TapA | 0 | 10.88 |
| TapB | PG2101 | TapB | 0 | 20.33 |
| TapC | PG2102 | TapC | 0 | 20.33 |
| Hypothetical and other | ||||
| ispF | PG0028 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 1.19E-28 | 2.20 |
| — | PG0161 | Hypothetical protein | 1.58E-134 | 3.34 |
| — | PG0216 | Hypothetical protein | 1.49E-182 | 4.80 |
| — | PG0217 | Hypothetical protein | 1.57E-298 | 4.69 |
| — | PG0218 | Hypothetical protein | 0 | 5.00 |
| — | PG0241 | Putative lipoprotein | 2.60E-05 | 2.07 |
| — | PG0297 | Hypothetical protein | 1.52E-18 | 2.00 |
| — | PG0323 | Hypothetical protein | 2.96E-36 | 2.31 |
| — | PG0419 | Hypothetical protein | 7.47E-20 | 2.27 |
| — | PG0606 | Hypothetical protein | 2.13E-29 | 2.25 |
| — | PG0607 | Hypothetical protein | 3.11E-13 | 2.44 |
| clpB | PG1118 | clpB protein | 9.12E-23 | 2.28 |
| — | PG1374 | Hypothetical protein | 6.87E-16 | 2.51 |
| — | PG1527 | Hypothetical protein | 1.39E-19 | 2.00 |
| — | PG1571 | Metallo-beta-lactamase superfamily protein | 5.44E-10 | 2.00 |
| — | PG1625 | Hypothetical protein | 1.62E-11 | 2.17 |
| — | PG1626 | Hypothetical protein | 3.75E-17 | 2.32 |
| — | PG1634 | Hypothetical protein | 3.84E-20 | 2.16 |
| — | PG1662 | Hypothetical protein | 7.73E-27 | 2.12 |
| — | PG1682 | Glycosyl transferase | 8.04E-54 | 2.44 |
| — | PG1683 | Hypothetical protein | 2.03E-26 | 2.10 |
| — | PG1684 | Hypothetical protein | 5.65E-42 | 3.20 |
| udk | PG1781 | Uridine kinase | 2.11E-30 | 2.30 |
| — | PG1835 | Putative lipoprotein | 3.05E-10 | 2.12 |
| aroA | PG1944 | 3-phosphoshikimate 1-carboxyvinyltransferase | 1.40E-20 | 2.04 |
| — | PG1945 | Hypothetical protein | 3.76E-34 | 2.31 |
| — | PG1967 | Hypothetical protein | 2.07E-34 | 2.33 |
| — | PG2103 | Hypothetical protein | 1.68E-37 | 2.30 |
| Transport | ||||
| — | PG0064 | CzcA family heavy metal efflux protein | 3.76E-42 | 2.29 |
| — | PG0280 | ABC transporter permease | 1.97E-11 | 2.00 |
| — | PG0281 | ABC transporter permease | 2.05E-14 | 2.00 |
| — | PG0282 | ABC transporter ATP-binding protein | 4.46E-13 | 3.00 |
| — | PG0680 | RND family efflux transporter MFP subunit | 3.77E-07 | 2.00 |
| — | PG1010 | ABC transporter ATP-binding protein | 5.74E-33 | 2.00 |
| — | PG1117 | MATE efflux family protein | 1.10E-07 | 2.00 |
| — | PG1176 | ABC transporter ATP-binding protein | 0.001661967 | 2.00 |
| — | PG1663 | ABC transporter ATP-binding protein | 6.34E-34 | 2.05 |
| — | PG1664 | ABC transporter permease | 2.07E-33 | 2.11 |
| — | PG1665 | ABC transporter permease | 3.06E-24 | 2.00 |
| — | PG1946 | ABC transporter | 1.56E-25 | 2.25 |
| Transcription | ||||
| — | PG0162 | ECF subfamily RNA polymerase sigma factor | 4.84E-10 | 2.10 |
| — | PG0214 | ECF subfamily RNA polymerase sigma factor | 0 | 5.87 |
| — | PG0215 | Putative anti-sigma factor | 1.25E-199 | 4.46 |
| — | PG1007 | GntR family transcriptional regulator | 9.11E-24 | 2.10 |
SPT, serine palmitoyl transferase.