Table 1. Genes whose transcripts form histone modification complexes together with retinoblastoma binding protein 7 (RBBP7).
Gene symbols | Relative expression levels * | Histone modification complexes |
---|---|---|
Rbbp7 | 209.55 | NuRD, SIN3, PRC2, HAT-B |
Rbbp4 | 127.84 | NuRD, SIN3, PRC2, HAT-B |
Hdac1 | 62.70 | NuRD, SIN3 |
Hdac2 | 34.67 | NuRD, SIN3 |
Gatad2b (p66β) | 23.26 | NuRD |
Chd4 | 17.15 | NuRD |
Mbd3 | 12.14 | NuRD |
Gatad2a (p66α) | 9.94 | NuRD |
Chd3 | 6.73 | NuRD |
Mta1 | 0.56 | NuRD |
Mta2 | 0.06 | NuRD |
Sap18 | 150.35 | SIN3 |
Sin3b | 69.22 | SIN3 |
Sin3a | 4.18 | SIN3 |
Sap30 | 0.00 | SIN3 |
Suz12 | 3.10 | PRC2 |
Ezh1 | 0.00 | PRC2 |
Ezh2 | 0.00 | PRC2 |
Eed | 0.00 | PRC2 |
Hat1 | 8.83 | HAT-B |
* Data are expressed as reads per kilobase per million mapped reads (RPKM). Symbols and names of gene or histone modification complexes are as follows: Chd3, Chromodomain helicase DNA binding protein 3; Chd4, Chromodomain helicase DNA binding protein 4; Eed, Embryonic ectoderm development; Ezh1, Enhancer of zeste 1 polycomb repressive complex 2 subunit; Ezh2, Enhancer of zeste 2 polycomb repressive complex 2 subunit; HAT-B, Type B histone acetyltransferases; Hat1, Histone acetyltransferase 1; Hdac1, Histone deacetylase 1; Hdac2, Histone deacetylase 2; Mbd3, Methyl-CpG binding domain protein 3; Mta1, Metastasis-associated proteins 1; Mta2, Metastasis-associated proteins 2; NuRD, Nucleosome remodeling and deacetylation; Gatad2a (p66α), GATA zinc finger domain containing 2A (Transcriptional repressor p66-alpha); Gatad2b (p66β), GATA zinc finger domain containing 2B (Transcriptional repressor p66-beta); PRC2, Polycomb repressive complex 2; Rbbp4, Retinoblastoma binding protein 4; Rbbp7, Retinoblastoma binding protein 7; Sap18, Sin3A associated protein 18; Sap30, Sin3A associated protein 30; SIN3, Sin3 histone deacetylase complex; Sin3a, SIN3 transcription regulator family member A; Sin3b, SIN3 transcription regulator family member B; Suz12, SUZ12 polycomb repressive complex 2 subunit.