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. 2020 Jan 19;66(2):125–133. doi: 10.1262/jrd.2019-149

Table 1. Genes whose transcripts form histone modification complexes together with retinoblastoma binding protein 7 (RBBP7).

Gene symbols Relative expression levels * Histone modification complexes
Rbbp7 209.55 NuRD, SIN3, PRC2, HAT-B
Rbbp4 127.84 NuRD, SIN3, PRC2, HAT-B
Hdac1 62.70 NuRD, SIN3
Hdac2 34.67 NuRD, SIN3
Gatad2b (p66β) 23.26 NuRD
Chd4 17.15 NuRD
Mbd3 12.14 NuRD
Gatad2a (p66α) 9.94 NuRD
Chd3 6.73 NuRD
Mta1 0.56 NuRD
Mta2 0.06 NuRD
Sap18 150.35 SIN3
Sin3b 69.22 SIN3
Sin3a 4.18 SIN3
Sap30 0.00 SIN3
Suz12 3.10 PRC2
Ezh1 0.00 PRC2
Ezh2 0.00 PRC2
Eed 0.00 PRC2
Hat1 8.83 HAT-B

* Data are expressed as reads per kilobase per million mapped reads (RPKM). Symbols and names of gene or histone modification complexes are as follows: Chd3, Chromodomain helicase DNA binding protein 3; Chd4, Chromodomain helicase DNA binding protein 4; Eed, Embryonic ectoderm development; Ezh1, Enhancer of zeste 1 polycomb repressive complex 2 subunit; Ezh2, Enhancer of zeste 2 polycomb repressive complex 2 subunit; HAT-B, Type B histone acetyltransferases; Hat1, Histone acetyltransferase 1; Hdac1, Histone deacetylase 1; Hdac2, Histone deacetylase 2; Mbd3, Methyl-CpG binding domain protein 3; Mta1, Metastasis-associated proteins 1; Mta2, Metastasis-associated proteins 2; NuRD, Nucleosome remodeling and deacetylation; Gatad2a (p66α), GATA zinc finger domain containing 2A (Transcriptional repressor p66-alpha); Gatad2b (p66β), GATA zinc finger domain containing 2B (Transcriptional repressor p66-beta); PRC2, Polycomb repressive complex 2; Rbbp4, Retinoblastoma binding protein 4; Rbbp7, Retinoblastoma binding protein 7; Sap18, Sin3A associated protein 18; Sap30, Sin3A associated protein 30; SIN3, Sin3 histone deacetylase complex; Sin3a, SIN3 transcription regulator family member A; Sin3b, SIN3 transcription regulator family member B; Suz12, SUZ12 polycomb repressive complex 2 subunit.