. 2020 Apr 10;16(4):e1007778. doi: 10.1371/journal.pcbi.1007778

Table 3. Rejection rates.

q = 13. 1000 iterations. α = 0.05. Same subjects for two traits. For CMC, B = 10³. Colocalization = No: type I errors for JLIM and conditional, power for coloc. Colocalization = Yes: power for JLIM and conditional, type I errors for coloc. For MA, B = 10³, u = 10 and s = 1.

Colocalization	Causal locations for trait 1 (size)	Causal locations for trait 2 (size)	JLIM	Conditional				coloc	HEIDI
Colocalization	Causal locations for trait 1 (size)	Causal locations for trait 2 (size)	JLIM	1^st SNP	CB	CMC	MA	coloc	HEIDI
No	1 (0.3)	None	0.042	0.057	0.002	0.030	0.032	0.029	0.164 (0.027)
	1 (0.3)	4 (0.3)	0	0.057	0.004	0.035	0.041	0.954	0.012 (0.011)
	1 (0.2), 5 (-0.3)	4 (0.3)	0.395	0.040	0.004	0.029	0.028	0.849	0.040 (0.034)
Yes	1 (0.2)	1 (0.2)	0.980	0.815	0.439	0.621	0.680	0.001	0.017 (0.014)
Yes	1 (0.2)	1 (0.2), 4 (0.4)	0.013	0.815	0.439	0.584	0.655	0.292	0.006 (0.006)