Skip to main content
. 2020 Apr 16;11:679. doi: 10.3389/fmicb.2020.00679

TABLE 1.

Characteristics of the putative LysM proteins in Clonostachys rosea, C. chloroleuca, and C. solani.

Name/ Signal peptide/ Genomic Coding No of Protein LysM No. Cys
protein ID Transmembrane§ sequences sequences introns length modules§ residuesλ̄
LYSM1# Transmembrane (87–109) 534 bp 531 bp 0 177 aa 1 (127–171) 4 (3)
LYSM2 Signal peptide (1–23) 1513 bp 1392 bp 2 464 aa 2 (235–280; 289–339) 22 (3; 3)
CHIC2 Signal peptide (1–20) 2955 bp 2598 bp 2 866 aa 2 (309–354; 372–419) 32 (3; 5)
MT037016# No 1440 1341 1 447 aa 1 (121–165) 7 (1)
MT037017# No 852 828 1 276 aa 3 (5–47; 122–160; 229–275) 11 (3; 3; 3)

ChtBD1, chitin-binding (CBM18) module; GH18, glycoside hydrolase family 18 module. #Secreted through a non-classical secretion pathway (SecretomeP score ≥ 0.91). §Number in parenthesis denotes the amino acid positions from N-terminus. CHIC2 contains additional modules ChtBD1 and GH18 between the amino acid position 443–449 and 513–862, respectively. λ̄Number in parenthesis denotes the Cys residues present in each LysM module. Gene encoding putative LysM protein with GenBank accession number MT037016, and gene encoding LysM protein GenBank accession number: MT037017 was found only in C. chloroleuca and C. solani, respectively.