Table 1.
Summary of genetic variations in the four sequenced groups.
| Parameter | casper | roy | wt-homo (AB) | wt-heter |
|---|---|---|---|---|
| Individual number | 10 | 10 | 4 | 4 |
| Raw bases (Gb) | 217.68 | 248.01 | 91.13 | 104.91 |
| Clean bases (Gb) | 159.03 | 167.59 | 62.2 | 63.86 |
| Homozygous SNPs (Mb) | 1.60 | 1.83 | 2.66 | 2.55 |
| Synonymous SNPs (bp) | 26,212 | 28,745 | 32,334 | 33,147 |
| Non-synonymous SNPs (bp) | 11,583 | 12,832 | 14,376 | 14,515 |
| Private homozygous SNPs * (bp) | 157,920 | 165,901 | 1,375,693 | 438,220 |
| Homozygous Indels | 350,678 | 407,000 | 630,190 | 665,766 |
| Private homozygous Indels * | 32,193 | 35,018 | 285,790 | 112,184 |
* Private homozygous single nucleotide polymorphisms (SNPs) and Indels are defined as those homozygous SNPs and Indels that were only identified in one group.