Table 2.
Model parameters for PCA, PLS-DA, and OPLS-DA.
Models | Model parameter | Cancer-Control |
Lump-Control |
Cancer-Lump |
|||
---|---|---|---|---|---|---|---|
Positive ions | Negative ion | Positive ions | Negative ion | Positive ions | Negative ion | ||
PCA | RX2 (cum) | 0.693 | 0.552 | 0.676 | 0.57 | 0.601 | 0.625 |
PLS-DA | RY2 (cum) | 0.983 | 0.991 | 0.973 | 0.997 | 0.682 | 0.888 |
Q2 (cum) | 0.839 | 0.892 | 0.892 | 0.878 | 0.0307 | 0.00537 | |
OPLS-DA | R Y2 (cum) | 0.998 | 0.999 | 0.992 | 1 | 0.682 | 0.991 |
Q2 (cum) | 0.876 | 0.783 | 0.892 | 0.848 | −0.00178 | 0.359 |
PCA, principle component analysis; PLS-DA, partial least squares discriminant analysis; OPLS-DA, orthogonal partial least squares discriminant analysis.