| 3′X | highly conserved 3′-terminal part of HCV 3′UTR |
| AA(s) | amino acid(s) |
| Ago | Argonaute (protein) |
| ARF | alternative reading frame |
| CRE | cis-acting replication element |
| CSFV | classical swine fever virus |
| DDX6 | DEAD-Box Helicase 6 |
| DENR | density regulated protein |
| Dom | domain |
| DRBD | sdRNA-binding domain |
| DZF | domain associated with zinc fingers |
| eIF | eukaryotic (translation) initiation factor |
| EM | electron microscopy |
| ER | endoplasmic reticulum |
| ES | expansion segment (of ribosomal 18S rRNA) |
| GT | genotype |
| HCC | hepatocellular carcinoma |
| HCV | Hepatitis C Virus |
| hnRNP | heterogeneous nuclear ribonucleoprotein |
| h | hour(s) |
| HuR | Hu Antigen R |
| IMP1 | IGF2 mRNA-binding protein 1 (also called ZBP, IGF2BP1, VICKZ1) |
| IRES | internal ribosome entry site |
| ITAF | IRES trans-acting factor |
| KD | dissociation constant |
| KH | K-homology domain (first identified in hnRNP K) |
| LNA | locked nucleic acid |
| LRI | long-range interaction (RNA–RNA, if not mentioned otherwise) |
| LSm | SM-like |
| MCT-1 | malignant T cell-amplified sequence 1 oncogene |
| Met | methionin |
| miR, miRNA | microRNA |
| NF | nuclear factor |
| NFAR | nuclear factor associated with dsRNA |
| NS | non-structural (protein of HCV) |
| NSAP1 | NS1-associated protein 1 |
| nt(s) | nucleotide(s) |
| ORF | open reading frame |
| PatL1 | PAT1 homolog 1, processing body mRNA decay factor |
| PCBP2 | poly(rC)-binding protein 2 |
| PK | pseudoknot |
| pos. | position |
| PSMA7 | proteasome subunit α7 |
| PTB | polypyrimidine tract binding protein |
| RBM | RNA binding motif protein |
| RBS | RNA-binding domain |
| RHA | RNA helicase A |
| RRM | RNA recognition motif (domain) |
| SL(s) | stem-loop(s) |
| U/C | poly(U/C) tract |
| UTR | untranslated region |
| VR | variable region |
| WD repeat | tryptophane-aspartate repeat (domain) |