Table 2. Various Components of the BFE (kcal mol–1) Evaluated by the MM/GBSA Method between the p53–MDM2 Complexa.
| p53–MDM2 |
MDM2 |
p53 |
Δ |
|||||
|---|---|---|---|---|---|---|---|---|
| average | std. dev. (±) | average | std. dev. (±) | average | std. dev. (±) | average | std. dev. (±) | |
| VDW | –776.69 | 12.17 | –638.49 | 11.02 | –65.47 | 3.10 | –72.72 | 5.38 |
| ELE | –7415.31 | 32.88 | –5970.25 | 31.26 | –1015.38 | 16.09 | –429.68 | 16.07 |
| GB | –1177.75 | 24.57 | –1244.09 | 23.12 | –390.48 | 12.80 | 456.82 | 16.43 |
| GBSUR | 40.87 | 0.84 | 40.68 | 0.82 | 10.96 | 0.19 | –10.76 | 0.38 |
| GAS | –8192.00 | 34.49 | –6608.75 | 31.12 | –1080.85 | 16.19 | –502.41 | 18.49 |
| GBSOL | –1136.88 | 24.19 | –1203.41 | 22.76 | –379.52 | 12.82 | 446.06 | 16.19 |
| GBTOT | –9328.88 | 26.38 | –7812.16 | 23.31 | –1460.37 | 7.37 | –56.35 | 4.64 |
| TSTRA | 16.06 | 0.00 | 15.93 | 0.00 | 14.29 | 0.00 | –14.16 | 0.00 |
| TSTRO | 15.93 | 0.00 | 15.76 | 0.00 | 13.17 | 0.01 | –13.01 | 0.01 |
| TSVIB | 1138.95 | 2.35 | 973.43 | 2.87 | 141.41 | 1.16 | 24.11 | 3.65 |
| TSTOT | 1170.94 | 2.36 | 1005.12 | 2.87 | 168.87 | 1.16 | –3.06 | 3.66 |
| ΔGbind | –53.29 | |||||||
Electrostatic energy (ELE); van der Waals contribution (VDW); total gas phase energy (GAS); nonpolar contribution to the solvation free energy (GBSUR); the electrostatic contribution to the solvation free energy (GB); sum of nonpolar and polar contributions to solvation (GBSOL); final estimated BFE (GBTOT); translational energy (TSTRA); rotational energy (TSROT); vibrational energy (TSVIB), total entropic contribution (TSTOT); and BFE (ΔGbind).