Table 1.
AT code, gene name, and description of genes discussed or mentioned in this review as well as the module to which they belong
| Module | AT code | Gene name | Gene description |
|---|---|---|---|
| – | AT1G75080 | BZR1 | BRASSINAZOLE RESISTANT 1 |
| – | AT1G75950 | SKP1/ASK1/UIP1 | S PHASE KINASE-ASSOCIATED PROTEIN 1/ARABIDOPSIS SKP1 HOMOLOGUE 1/UFO INTERACTING PROTEIN 1 |
| – | AT3G48100 | ARR5/IBC6 | ARABIDOPSIS THALIANA RESPONSE REGULATOR 5/INDUCED BY CYTOKININ 6 |
| – | AT3G56980 | ORG3/BHLH039 | OBF-BINDING PROTEIN 3 (OBP3)-RESPONSIVE GENE 3/BASIC HELIX-LOOP-HELIX 39 |
| – | AT4G02570 | CUL1/ICU13 | CULLIN 1/INCURVATA 13 |
| – | AT4G18710 | BIN2 | BRASSINOSTEROID-INSENSITIVE 2 |
| – | AT4G23750 | CRF2/TMO3 | CYTOKININ RESPONSE FACTOR 2/TARGET OF MONOPTEROS 3 |
| – | AT5G57660 | COL5/BBX6 | CONSTANS-LIKE 5/B-BOX DOMAIN PROTEIN 6 |
| – | AT5G67060 | HEC1 | HECATE 1 |
| Cell expansion | AT1G09530 | PIF3 | PHYTOCHROME INTERACTING FACTOR 3 |
| Cell expansion | AT1G19840 | SAUR53 | SMALL AUXIN UPREGULATED RNA 53 |
| Cell expansion | AT1G26770 | EXP10 | EXPANSIN 10 |
| Cell expansion | AT1G74660 | MIF1 | MINI ZINC-FINGER 1 |
| Cell expansion | AT1G75240 | ZHD5/HB33 | ZINC-FINGER HOMEODOMAIN 5/HOMEOBOX PROTEIN 33 |
| Cell expansion | AT2G43010 | PIF4 | PHYTOCHROME INTERACTING FACTOR 4 |
| Cell expansion | AT2G45210 | SAUR36/SAG201 | SMALL AUXIN UPREGULATED 36/SENESCENCE-ASSOCIATED GENE 201 |
| Cell expansion | AT2G46660 | EOD3/CYP78A6 | ENHANCER OF DA-1 3/CYTOCHROME P450, FAMILY 78, SUBFAMILY A, POLYPEPTIDE 6 |
| Cell expansion | AT3G02150 | TCP13/PTF1 | TEOSINTE BRANCHED 1/CYCLOIDEA/PROLIFERATING CELL NUCLEAR ANTIGEN FACTOR 13/PLASTID TRANSCRIPTION FACTOR 1 |
| Cell expansion | AT3G61890 | ATHB12 | ARABIDOPSIS THALIANA HOMEOBOX 12 |
| Cell expansion | AT5G18010 | SAUR19 | SMALL AUXIN UP RNA 19 |
| Cell expansion | AT5G47390 | KUA1/MYBH | KUODA1/MYB HYPOCOTYL ELONGATION-RELATED |
| Cell expansion | Gene group | PP2C | 2C PROTEIN PHOSPHATASE |
| Cell expansion | Gene group | EXPA | EXPANSIN A |
| Cell cycle machinery | AT1G08560 | KNOLLE/SYP111 | SYNTAXIN OF PLANTS 111 |
| Cell cycle machinery | AT1G32310 | SAMBA | SAMBA |
| Cell cycle machinery | AT3G07870 | FBX92 | F-BOX PROTEIN 92 |
| Cell cycle machinery | AT3G54650 | FBL17 | F-BOX LIKE 17 |
| Cell cycle machinery | Gene group | APC/C | ANAPHASE PROMOTING COMPLEX/CYCLOSOME |
| Cell cycle machinery | Gene group | CCS52A | CELL CYCLE SWITCH PROTEIN 52 A |
| Cell cycle machinery | Gene group | CDC20 | CELL DIVISION CYCLE 20 |
| Cell cycle machinery | Gene group | CDK | CYCLIN DEPENDANT KINASE |
| Cell cycle machinery | Gene group | CYC | CYCLIN |
| Cell cycle machinery | Gene group | DP | DIMERISATION PROTEIN |
| Cell cycle machinery | Gene group | KRP/ICK | KIP-RELATED PROTEIN/INTERACTOR OF CDKs |
| Cell cycle machinery | Gene group | RBR | RETINOBLASTOMA-RELATED |
| Cell cycle machinery | Gene group | SIM | SIAMESE |
| Cell cycle machinery | Gene group | SMR | SIAMESE-RELATED |
| DA1–EOD1 | AT1G14920 | GAI/RGA2 | GIBBERELLIC ACID INSENSITIVE/RESTORATION ON GROWTH ON AMMONIA 2 |
| DA1–EOD1 | AT1G15550 | GA3OX1 | GIBBERELLIN 3-OXIDASE 1 |
| DA1–EOD1 | AT1G17110 | UBP15/SOD2 | UBIQUITIN-SPECIFIC PROTEASE 15/SUPPRESSOR OF DA1 2 |
| DA1–EOD1 | AT1G19270 | DA1 | DA1 |
| DA1–EOD1 | AT1G69690 | TCP15 | TEOSINTE BRANCHED 1/CYCLOIDEA/PROLIFERATING CELL NUCLEAR ANTIGEN FACTOR 15 |
| DA1–EOD1 | AT1G72010 | TCP22 | TEOSINTE BRANCHED 1/CYCLOIDEA/PROLIFERATING CELL NUCLEAR ANTIGEN FACTOR 22 |
| DA1–EOD1 | AT1G78420 | DA2 | DA2 |
| DA1–EOD1 | AT2G39830 | DAR2 | DA1-RELATED PROTEIN 2 |
| DA1–EOD1 | AT3G47620 | TCP14 | TEOSINTE BRANCHED 1/CYCLOIDEA/PROLIFERATING CELL NUCLEAR ANTIGEN FACTOR 14 |
| DA1–EOD1 | AT3G63530 | BB/EOD1 | BIG BROTHER/ENHANCER1 OF DA1 |
| DA1–EOD1 | AT4G25420 | GA20OX1 | GIBBERELLIN 20-OXIDASE 1 |
| DA1–EOD1 | AT4G36860 | DAR1 | DA1-RELATED PROTEIN 1 |
| GA–DELLA | AT1G66350 | RGL1 | RGA-LIKE 1 |
| GA–DELLA | AT2G01570 | RGA1 | REPRESSOR OF GA1-3 |
| GA–DELLA | AT3G03450 | RGL2 | RGA-LIKE 2 |
| GA–DELLA | AT3G04240 | SEC | SECRET AGENT |
| GA–DELLA | AT3G11540 | SPY | SPINDLY |
| GA–DELLA | AT4G24210 | SLY | SLEEPY 1 |
| GA–DELLA | AT5G17490 | RGL3 | RGA-LIKE PROTEIN 3 |
| GA–DELLA | GID2 | GIBBERELLIN INSENSITIVE DWARF 2 | |
| GRF–GIF | AT1G01160 | GIF2 | GRF1-INTERACTING FACTOR 2 |
| GRF–GIF | AT2G06200 | GRF6 | GROWTH-REGULATING FACTOR 6 |
| GRF–GIF | AT2G22840 | GRF1 | GROWTH-REGULATING FACTOR 1 |
| GRF–GIF | AT2G36400 | GRF3 | GROWTH-REGULATING FACTOR 3 |
| GRF–GIF | AT2G45480 | GRF9 | GROWTH-REGULATING FACTOR 9 |
| GRF–GIF | AT3G13960 | GRF5 | GROWTH-REGULATING FACTOR 5 |
| GRF–GIF | AT3G52910 | GRF4 | GROWTH-REGULATING FACTOR 4 |
| GRF–GIF | AT4G00850 | GIF3 | GRF1-INTERACTING FACTOR 3 |
| GRF–GIF | AT4G24150 | GRF8 | GROWTH-REGULATING FACTOR 8 |
| GRF–GIF | AT4G37740 | GRF2 | GROWTH-REGULATING FACTOR 2 |
| GRF–GIF | AT5G28640 | GIF1/AN3 | GRF1-INTERACTING FACTOR 1/ANGUSTIFOLIA 3 |
| GRF–GIF | AT5G53660 | GRF7 | GROWTH-REGULATING FACTOR 7 |
| KLU | AT1G13710 | KLU/CYP78A5 | KLUH/CYTOCHROME P450, FAMILY 78, SUBFAMILY A, POLYPEPTIDE 5 |
| KLU | AT3G11580 | NGAL2/SOD7 | NGATHA-LIKE PROTEIN 2/SUPRESSOR OF DA1 7 |
| KLU | AT5G06250 | NGAL3/DPA4 | NGATHA-LIKE PROTEIN 3/DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 |
| PPD | AT1G15750 | TPL/WSIP1 | TOPLESS/WUS-INTERACTING PROTEIN 1 |
| PPD | AT3G24150 | KIX8 | KINASE-INDUCIBLE DOMAIN INTERACTING 8 |
| PPD | AT4G14713 | PPD1 | PEAPOD 1 |
| PPD | AT4G14720 | PPD2 | PEAPOD 2 |
| PPD | AT4G28910 | NINJA | NOVEL INTERACTOR OF JAZ |
| PPD | AT4G32295 | KIX9 | KINASE-INDUCIBLE DOMAIN INTERACTING 9 |
| PPD | AT5G35770 | SAP/SOD3 | STERILE APETALA/SUPRESSOR OF DA1 3 |
| SWI/SNF | AT1G18450 | ARP4 | ACTIN-RELATED PROTEIN 4 |
| SWI/SNF | AT2G28290 | SYD/CHR3 | SPLAYED/CHROMATIN REMODELING COMPLEX SUBUNIT R 3 |
| SWI/SNF | AT2G46020 | BRM | BRAHMA |
| SWI/SNF | AT3G01890 | SWP73A/CHC2 | SWI/SNF ASSOCIATED PROTEIN 73 A |
| SWI/SNF | AT3G06010 | CHR12 | CHROMATIN REMODELING 12 |
| SWI/SNF | AT3G17590 | BSH | BUSHY GROWTH |
| SWI/SNF | AT3G17590 | SNF5 | SUCROSE NON-FERMENTING 5 |
| SWI/SNF | AT3G60830 | ARP7 | ACTIN-RELATED PROTEIN 7 |
| SWI/SNF | AT5G14170 | SWP73B/CHC1 | SWI/SNF ASSOCIATED PROTEIN 73 B |
| SWI/SNF | AT5G19310 | CHR23 | CHROMATIN REMODELING 23 |
| SWI/SNF | Gene group | SWI/SNF | SWITCH/SUCROSE NON-FERMENTING |
| SWI/SNF | Gene group | SWI3 | SWITCH |
Protein groups or families represent multiple genes and therefore have no AT code.