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. 2020 Apr 13;2020:9145626. doi: 10.1155/2020/9145626

Table 3.

Binding energy, hydrogen bond, hydrophobic interaction, and binding distance of docked pose of Bcl-2, with kcal/mol used as unit of binding affinity.

Compound Docking score (kcal/mol) in AutoDock Docking score in MOE H-bond interactions Hydrophobic interactions
Amino acids distance (Å) Amino acids
distance (Å)
D1 −7.9 −11.29 Arg86 (2.3 Å), Trp135 (1.9 Å), Glu138 (2.2 Å) Phe89 (5.1 Å), Ala90 (5.1 Å)
D2 −8.1 −11.26 Ala90 (2.9 Å), Glu138 (2.4 Å), Trp135 (2.5) Phe89 (5.1 Å), Ala90 (5.1 Å)
D3 −7.7 −10.75 Asn102 (2.40), Gly104 (2.59), Tyr161 (2.05), Leu160 (2.40) Phe63 (3.23), Tyr67 (5.15), Ala108 (5.02), Ala59 (4.47), Val107 (5.13), Arg105 (4.23), Ala108 (3.41)