Table 3.
Binding energy, hydrogen bond, hydrophobic interaction, and binding distance of docked pose of Bcl-2, with kcal/mol used as unit of binding affinity.
| Compound | Docking score (kcal/mol) in AutoDock | Docking score in MOE | H-bond interactions | Hydrophobic interactions |
|---|---|---|---|---|
| Amino acids distance (Å) | Amino acids distance (Å) |
|||
| D1 | −7.9 | −11.29 | Arg86 (2.3 Å), Trp135 (1.9 Å), Glu138 (2.2 Å) | Phe89 (5.1 Å), Ala90 (5.1 Å) |
| D2 | −8.1 | −11.26 | Ala90 (2.9 Å), Glu138 (2.4 Å), Trp135 (2.5) | Phe89 (5.1 Å), Ala90 (5.1 Å) |
| D3 | −7.7 | −10.75 | Asn102 (2.40), Gly104 (2.59), Tyr161 (2.05), Leu160 (2.40) | Phe63 (3.23), Tyr67 (5.15), Ala108 (5.02), Ala59 (4.47), Val107 (5.13), Arg105 (4.23), Ala108 (3.41) |