Skip to main content
. 2020 Apr 23;21(Suppl 3):63. doi: 10.1186/s12859-020-3342-z

Table 2.

Parameters in DeepSuccinylSite

Parameters Settings
Embedding Output Dimension 21
Learning Rate 0.001
Batch Size 256
Epochs 80
Conv2d_1 number of filters 64
Conv2d_1 filter size 17 × 3 (For window size 33)
Conv2d_1 padding Disabled
Dropout 0.6
Conv2d_1 number of filters 128
Conv2d_1 filter size 3 × 3
Conv2d_1 padding Enabled
Dropout 0.6
MaxPooling2d 2 × 2
Dense 1 768
Dropout 0.5
Dense_2 256
Dropout 0.5
Checkpointer Best validation accuracy