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. 2020 Apr 23;24:170. doi: 10.1186/s13054-020-02893-8

SARS-CoV-2 viral load in sputum correlates with risk of COVID-19 progression

Xia Yu 1,#, Shanshan Sun 1,#, Yu Shi 1, Hao Wang 1, Ruihong Zhao 1, Jifang Sheng 1,
PMCID: PMC7179376  PMID: 32326952

The pandemic of coronavirus diseases 2019 (COVID-19) imposes a heavy burden on medical resources [1]. Whether there is correlation between viral load and disease severity has not been clarified. In the study, we retrospectively collected the virological data, as well as demographic, epidemiological clinical information of 92 patients with confirmed COVID-19 in a single hospital in Zhejiang Province, China. We compared the baseline viral loads between severe patients and those mild to moderate at admission and also between those developing severe disease during hospitalization and those not.

We studied 92 patients with confirmed COVID-19 who were admitted from January 19, 2020, to March 19, 2020, in the First Affiliated Hospital of Zhejiang University. The sputum specimens were collected from the lower respiratory tract of each patient at admission and the levels of viral nuclei acid were determined by a real-time PCR (RT-PCR) approach and indicated by the cycle threshold (Ct) values of RT-PCR assays [2]. Other demographic, epidemiological and clinical information were collected and inputted into a pre-designated electronic data collection form. All patients followed up to March 15, 2020. All the statistical analyses were performed using GraphPad Prism 5 (GraphPad Software Inc.; San Diego, CA, USA) and SPSS 20.0 (SPSS Inc.; Chicago, IL, USA).

Of the 92 patients, 30 were severe on admission. Of the other 62 mild-moderate cases at admission, 11 cases became severe during hospitalization. The demographic, epidemiological and clinical information was shown in Table 1. All patients were tested for SARS-CoV-2 nucleic acid on sputum specimens from the lower respiratory tract at admission. As shown in Fig. 1a, severe patients had significantly lower Ct values than mild-moderate cases at admission (25 vs. 28, p = 0.017), suggesting a higher viral load in the lower respiratory tract. Furthermore, a higher viral load was observed in sputum specimens from patients who became severe during the hospitalization than those did not (24 vs. 29, p = 0.008). As shown in Fig. 1b, the Ct values of RT-PCR assays negatively correlated with the probability of progression to severe type in all the patients representing mild-to-moderate at admission.

Table 1.

Demographic, comorbidities, epidemiological characteristics, and clinical and laboratory findings of patients with confirmed COVID-19 at admission

Variables Total (n = 92) Mild-moderate at admission Severe at admission (n = 30) P value*
Persistent mild-moderate during hospitalization (n = 51) Mild-moderate to severe during hospitalization (n = 11) P value# Total (n = 62)
Demographic data
 Age (years) 55 ± 16 49 ± 13 59 ± 17 0.032 51 ± 15 63 ± 16 0.001
 Sex
  Male 57 (62%) 26 (51%) 8 (72.7%) 34 (54.8%) 23 (76.7%)
  Female 35 (38%) 25 (49%) 3 (27.3%) 0.189 28 (45.2%) 7 (23.3%) 0.043
 Occupation
  Agricultural worker 45 (48.9%) 25 (49%) 7 (63.6%) 32 (51.6%) 13 (43.3%)
  Self-employed 21 (22.8%) 15 (29.4%) 2 (18.7%) 17 (27.4%) 4 (13.3%)
  Employee 8 (8.7%) 5 (9.8%) 0 (0%) 5 (8.1%) 3 (10%)
  Retired 17 (18.5%) 5 (9.8%) 2 (18.2%) 7 (11.3%) 10 (33.3%)
  Students 1 (1.1%) 1 (2%) 0 (0%) 0.669 1 (1.6%) 0 (0%) 0.082
 Smoking history
  Yes 16 (17.4%) 7 (13.7%) 3 (27.3%) 17 (27.4%) 6 (20%)
  No 76 (82.6%) 44 (86.3%) 8 (72.7%) 0.268 45 (72.6%) 24 (80%) 0.441
Comorbidities
 Hypertension 33 (35.9%) 10 (19.6%) 7 (63.6%) 0.003 17 (27.4%) 16 (53.3%) 0.016
 Diabetes 9 (9.8%) 1 (2%) 2 (18.2%) 0.024 3 (4.8%) 6 (20%) 0.022
 Cardiovascular disease 8 (8.7%) 2 (3.9%) 1 (9.1%) 0.472 3 (4.8%) 5 (16.7%) 0.060
 Chronic liver diseases 4 (4.3%) 2 (3.9%) 1 (9.1%) 0.472 3 (4.8%) 1 (3.3%) 0.741
 Chronic renal diseases 3 (3.3%) 0 (0%) 1 (9.1%) 0.031 1 (1.6%) 2 (6.7%) 0.203
 Others 6 (6.5%) 0 (0%) 2 (18.2%) 0.002 2 (3.2%) 4 (13.3%) 0.067
Epidemiological characteristics
 Exposure to confirmed cases 46 (50%) 30 (58.8%) 5 (45.5%) 0.421 35 (56.5%) 11 (36.7%) 0.077
 Family cluster 27 (29.3%) 15 (29.4%) 4 (36.4%) 0.653 19 (30.6%) 8 (26.7%) 0.696
 Recent travel or residence to/in epidemic area 25 (27.2%) 11 (21.6%) 4 (36.4%) 0.303 15 (24.2%) 10 (33.3%) 0.358
Signs and symptoms
 Fever 84 (91.3%) 45 (88.2%) 11 (100%) 0.235 56 (90.3%) 28 (93.3%) 0.633
 Cough 58 (63%) 32 (62.7%) 7 (63.6%) 0.956 39 (62.9%) 13 (43.3%) 0.968
 Fatigue 6 (6.5%) 1 (2%) 2 (18.2%) 0.024 3 (4.8%) 3 (10%) 0.350
 Diarrhea 7 (7.6%) 1 (2%) 1 (9.1%) 0.229 2 (3.2%) 5 (16.7%) 0.023
 Nausea and vomiting 4 (4.3%) 3 (5.9%) 1 (9.1%) 0.697 4 (6.5%) 0 (0%) 0.157
 Shortness of breath 25 (27.2%) 2 (3.9%) 4 (36.4%) 0.001 6 (9.7%) 19 (63.3%) < 0.001
 Time to admission 3 (4) 4 (3) 1 (4) 0.011 4 (4) 1 (4) 0.211
 Time to confirmed diagnosis 5 (5) 5 (4) 4 (4) 0.160 5 (4) 3 (6) 0.239
Laboratory parameters
 WBC 6.5 (5.9) 5.2 (4.1) 7.5 ± 3.4 0.188 5.4 (4.5) 10.8 ± 5.6 < 0.001
 Lymphocyte 0.8 (0.6) 0.97 ± 0.47 0.7 (0.4) 0.147 0.9 (0.7) 0.5 (0.5) 0.001
 Platelet 191 (76) 193 (83) 170 ± 56 0.159 192 (84) 191 ± 45 0.851
 CRP 27 (37) 13 (27) 37 ± 27 0.036 16 (30) 39 (29) < 0.001
 ALT 23 (22) 23 (24) 17 (15) 0.338 22 (23) 23 (16) 0.723
 AST 22 (16) 21 (12) 21 (18) 1.000 21 (12) 26 (23) 0.236
 Cr 75 (25) 71 ± 26 84 (39) 0.054 73 (28) 84 (33) 0.019
 INR 0.98 (0.09) 0.97 ± 0.08 0.97 (0.04) 0.507 0.97 ± 0.06 1.01 ± 0.09 0.050
 Bilirubin 10.8 (6.0) 12.2 (5.0) 10.0 (6.0) 0.912 10.6 (5.0) 12.6 (9.0) 0.097
 LDH 281 ± 105 227 (103) 279 ± 101 0.376 229 (113) 339 (121) < 0.001
 CK 70 (76) 63 (61) 76 (60) 0.495 64 (58) 97 (172) 0.011
 Urea nitrogen 5.3 (3.7) 4.4 (1.7) 6.8 (6.9) < 0.001 4.6 (2.2) 7.7 (4.2) < 0.001
 CT scan
  Normal 3 (3.3%) 3 (5.9%) 0 (0%) 3 (4.8%) 0 (0%)
  Local lesion 5 (5.4%) 4 (7.8%) 0 (0%) 4 (6.5%) 1 (3.3%)
  Multi-lesions 84 (91.3%) 44 (86.3%) 11 (100%) 1.000 55 (88.7%) 29 (96.7%) 1.000
 ICU admission 27 (29.3%) 0 (0%) 8 (72.7%) < 0.001 8 (12.9%) 19 (63.3%) < 0.001

Data are expressed as number (percent), mean ± standard deviation (SD), or median (IQR)

#P values comparing data between patients becoming severe and those who did not during hospitalization by the Mann-Whitney U test, chi-squared test, or Fisher’s exact test

*P values comparing data between mild-moderate patients and severe patients at admission

Fig. 1.

Fig. 1

a Comparison of baseline sputum viral load between severe and mild-to-moderate patients at admission or between those becoming severe and those did not during the hospitalization. b Relationship between the estimated probability of disease progression during the hospitalization and baseline sputum viral load. Viral load is indicated by the Ct value of RT-PCR assay. The asterisk indicates a P value < 0.05

We found that the viral load of the sputum specimen in the lower respiratory tract tested at baseline is closely related to the severity of COVID-19. More importantly, patients with a higher baseline viral load are more likely to become severe. This finding apparently justifies the concept that early antiviral treatment, if effective, would reduce the risk of progression and thereby the mortality, which has been demonstrated in influenza [3]. In our study, sputum specimens were used, instead of nasopharyngeal and oropharyngeal swabs because it has been shown that samples from lower respiratory tract generally contain a higher level of viral load than nasopharyngeal and oropharyngeal swabs [4] and acquiring swabs is uncomfortable for patients.

In summary, we found a positive association between sputum viral load and disease severity as well as risk of progression.

Acknowledgements

Not applicable.

Authors’ contributions

J.S conceptualized the idea and designed the study. X.Y and S.S drafted the manuscript and J.S revised it. X.Y, S.S, Y.S, H.W, and R.Z participated in the data collection, analysis, and interpretation. The authors read and approved the final manuscript.

Funding

This work was supported by grants from Chinese National Natural science foundation (no. 81670567 and 81870425) and the Fundamental Research Funds for the Central Universities.

Availability of data and materials

The datasets and materials used and/or analyzed during the current study are available from the corresponding author on reasonable request.

Ethics approval and consent to participate

This study is reviewed and approved by the ethics committee of the First Affiliated Hospital of Zhejiang University. Following a full explanation of the study, written consent was obtained from each patient or his/her authorized representatives.

Consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

Footnotes

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Xia Yu and Shanshan Sun contributed equally to this work.

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

The datasets and materials used and/or analyzed during the current study are available from the corresponding author on reasonable request.


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