Figure S1.

Subgenomic RNAs with Large Deletions between nsp2/3 and N Regions, Related to Figure 2

Sequence alignments of the 3′-intact DRS reads mapped to the genomic interval 800–12,000. The x axis highlights two separate ranges. The filled black curves on top show the read coverage. Single read alignment is shown as a set of thick bars and lines connected. Thick bars on the alignments indicate contiguous mappings consisting of matches, mismatches, insertions, and small deletions. The lines show the large gaps longer than 50 nt.