Table 3.
Function enrichment for genes regulated by lncRNAs.
| Category | Term | FDR | Genes |
|---|---|---|---|
| Biology process | GO:0000279~M phase | 1.06E-14 | EXO1, CDK1, XRCC2, KIF18A, CHEK1, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, RAD51, CCNB1, SPC25, CDCA8, MC1R, BUB1B, RAD54B, SKA1, DSCC1, TRIP13 |
| GO:0022403~cell cycle phase | 5.37E-14 | EXO1, CDK1, XRCC2, KIF18A, CHEK1, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, RAD51, CCNB1, SPC25, CDCA8, MC1R, MTBP, BUB1B, RAD54B, SKA1, DSCC1, TRIP13 | |
| GO:0007049~cell cycle | 1.17E-12 | XRCC2, CHEK1, ANLN, CEP55, AURKB, PTTG1, CCNE2, SPC25, CDCA8, MC1R, HJURP, MTBP, SKA1, TRIP13, EXO1, CDK1, KIF18A, BIRC5, MCM2, UBE2C, RACGAP1, RAD51, CCNB1, BUB1B, RAD54B, DSCC1 | |
| GO:0022402~cell cycle process | 2.15E-12 | EXO1, CDK1, XRCC2, KIF18A, CHEK1, ANLN, BIRC5, AURKB, PTTG1, CEP55, RACGAP1, UBE2C, RAD51, CCNB1, SPC25, CDCA8, MC1R, MTBP, BUB1B, RAD54B, SKA1, DSCC1, TRIP13 | |
| GO:0000280~nuclear division | 1.02E-09 | CDK1, KIF18A, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, CCNB1, SPC25, CDCA8, MC1R, BUB1B, SKA1, DSCC1 | |
| GO:0007067~mitosis | 1.02E-09 | CDK1, KIF18A, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, CCNB1, SPC25, CDCA8, MC1R, BUB1B, SKA1, DSCC1 | |
| GO:0000087~M phase of mitotic cell cycle | 1.31E-09 | CDK1, KIF18A, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, CCNB1, SPC25, CDCA8, MC1R, BUB1B, SKA1, DSCC1 | |
| GO:0048285~organelle fission | 1.77E-09 | CDK1, KIF18A, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, CCNB1, SPC25, CDCA8, MC1R, BUB1B, SKA1, DSCC1 | |
| GO:0000278~mitotic cell cycle | 7.02E-09 | CDK1, KIF18A, CHEK1, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, CCNB1, SPC25, CDCA8, MC1R, MTBP, BUB1B, SKA1, DSCC1 | |
| GO:0051301~cell division | 7.44E-07 | CDK1, ANLN, BIRC5, AURKB, PTTG1, CEP55, UBE2C, RACGAP1, CCNB1, CCNE2, SPC25, CDCA8, BUB1B, SKA1 | |
| GO:0006310~DNA recombination | 6.41E-04 | EXO1, RECQL4, XRCC2, RAD51AP1, CHEK1, RAD54B, TRIP13, RAD51 | |
| GO:0007059~chromosome segregation | 2.44E-03 | SPC25, HJURP, KIF18A, BIRC5, SKA1, PTTG1, DSCC1 | |
| GO:0006259~DNA metabolic process | 3.22E-03 | EXO1, RECQL4, XRCC2, RAD51AP1, CHEK1, PTTG1, MCM2, RAD51, CCNE2, RAD54B, DNMT3B, TRIP13, DSCC1 | |
| GO:0006974~response to DNA damage stimulus | 8.66E-03 | EXO1, RECQL4, CDK1, XRCC2, RAD51AP1, CHEK1, RAD54B, SFN, PTTG1, TRIP13, RAD51 | |
| GO:0006302~double-strand break repair | 1.25E-02 | RECQL4, XRCC2, RAD51AP1, RAD54B, TRIP13, RAD51 | |
| GO:0051726~regulation of cell cycle | 2.38E-02 | CCNE2, CCNB1, CDK1, MTBP, BUB1B, BIRC5, CHEK1, ANLN, SFN, UBE2C | |
|
| |||
| Cellular component | GO:0000775~chromosome, centromeric region | 4.42E-05 | SPC25, CDCA8, CENPM, HJURP, BUB1B, BIRC5, SKA1, AURKB, DSCC1 |
| GO:0015630~microtubule cytoskeleton | 2.92E-04 | KIFC2, CDK1, KIF18A, BIRC5, CHEK1, CEP55, AURKB, RACGAP1, CCNB1, CDCA8, MC1R, BUB1B, SKA1, KIF20A | |
| GO:0005694~chromosome | 3.28E-04 | CENPM, CHEK1, BIRC5, AURKB, MCM2, RAD51, SPC25, CDCA8, HJURP, BUB1B, SKA1, DNMT3B, DSCC1 | |
| GO:0044427~chromosomal part | 4.63E-04 | SPC25, CDCA8, CENPM, HJURP, BUB1B, BIRC5, CHEK1, SKA1, MCM2, AURKB, DNMT3B, DSCC1 | |
| GO:0000793~condensed chromosome | 1.09E-03 | SPC25, CENPM, HJURP, BUB1B, CHEK1, SKA1, AURKB, RAD51 | |
| GO:0005819~spindle | 2.63E-03 | CDK1, CDCA8, KIF18A, BUB1B, BIRC5, SKA1, AURKB, RACGAP1 | |
| GO:0043232~intracellular non-membrane-bounded organelle | 3.08E-03 | KIFC2, CHEK1, ANLN, AURKB, CEP55, SPC25, CDCA8, MC1R, HJURP, STK39, SKA1, DNMT3B, ETV4, CDK1, CENPM, EPPK1, KIF18A, BIRC5, MCM2, FLNC, RACGAP1, CABYR, RAD51, CCNB1, BUB1B, DSCC1, KIF20A | |
| GO:0043228~non-membrane-bounded organelle | 3.08E-03 | KIFC2, CHEK1, ANLN, AURKB, CEP55, SPC25, CDCA8, MC1R, HJURP, STK39, SKA1, DNMT3B, ETV4, CDK1, CENPM, EPPK1, KIF18A, BIRC5, MCM2, FLNC, RACGAP1, CABYR, RAD51, CCNB1, BUB1B, DSCC1, KIF20A | |
| GO:0005856~cytoskeleton | 6.60E-03 | KIFC2, CDK1, EPPK1, KIF18A, CHEK1, ANLN, BIRC5, AURKB, CEP55, FLNC, RACGAP1, CABYR, CCNB1, CDCA8, MC1R, BUB1B, STK39, SKA1, KIF20A | |
| GO:0000779~condensed chromosome, centromeric region | 8.57E-03 | SPC25, CENPM, HJURP, BUB1B, SKA1, AURKB | |
| GO:0044430~cytoskeletal part | 2.60E-02 | KIFC2, CDK1, KIF18A, CHEK1, ANLN, BIRC5, CEP55, AURKB, RACGAP1, CCNB1, CDCA8, MC1R, BUB1B, SKA1, KIF20A | |
|
| |||
| Molecular function | GO:0001882~nucleoside binding | 2.49E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 |
| GO:0032559~adenyl ribonucleotide binding | 2.59E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
| GO:0001883~purine nucleoside binding | 2.87E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
| GO:0030554~adenyl nucleotide binding | 3.20E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
| GO:0032555~purine ribonucleotide binding | 3.27E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, MC1R, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
| GO:0032553~ribonucleotide binding | 3.27E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, MC1R, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
| GO:0005524~ATP binding | 4.36E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
| GO:0017076~purine nucleotide binding | 4.65E-02 | KIFC2, RECQL4, CDK1, XRCC2, PFKFB4, KIF18A, CHEK1, MCM2, AURKB, UBE2C, RAD51, MC1R, BUB1B, STK39, RAD54B, PRKAA2, MELK, KIF20A, TRIP13 | |
|
| |||
| KEGG pathway | hsa04110:cell cycle | 6.96E-04 | CCNE2, CCNB1, CDK1, BUB1B, CHEK1, MCM2, SFN, PTTG1 |
| hsa04115:p53 signaling pathway | 1.84E-02 | CCNE2, CCNB1, CDK1, CHEK1, SFN | |
| hsa03440:homologous recombination | 4.58E-02 | XRCC2, RAD54B, RAD51 | |
| hsa04114:oocyte meiosis | 4.92E-02 | CCNE2, CCNB1, CDK1, PTTG1 | |
FDR: false discovery rate; GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes.