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. 2020 Apr 23;21:322. doi: 10.1186/s12864-020-6738-2

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© The Author(s). 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Histograms of pairwise SNP distances. The x-axis shows pairwise SNP distance and the y-axis shows the frequencies of distances between isolates. (a) Distances between replicates of M. avium subsp. hominissuis (blue arrow) were less than 200 (black dashed line), whereas the distance between isolates from Patient A and B (red arrow) was 14,768. (b) The distance between M. intracellulare isolates from Patients C and D living together in HOME-2 (red arrow) was higher than the distance between isolates from Patients C and E living in other houses (blue arrow)