REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited Data
MSBB RNAseq	https://www.synapse.org/#!Synapse:syn20801188	syn20801188
ROSMAP RNAseq	https://www.synapse.org/#!Synapse:syn3388564	syn3388564
PathSeq Analysis of MSBB and ROSMAP Data	This paper	DOI: 10.17632/mw2ngtsh6h.1
Oligonucleotides
HHV-6A U57 Probe: FAM-CTGGAACTGTATAATAGG-MGBNFQ	Leibovitch, 2014, PLoS One
HHV-6B U57 Probe: VIC-CTGGAGCTGTACAACAG -MGBNFQ	Leibovitch, 2014, PLoS One
HHV-6AB U57 Forward Primer: CCGTGGGATCGTCTAAAATTATAGATGT	Leibovitch, 2014, PLoS One
HHV-6AB Reverse Primer: CCACACTAGTCCGGACGGATAA	Leibovitch, 2014, PLoS One
RPP30 Probe: VIC-CTGACCTGAAGGCTCT-MGBNFQ	Hindson, 2011, Anal Chem.
RPP30 Forward Primer: GATTTGGACCTGCGAGCG	Hindson, 2011, Anal Chem.
RPP30 Reverse Primer: GCGGCTGTCTCCACAAGT	Hindson, 2011, Anal Chem.
Software and Algorithms
R	https://cran.r-project.org/
gatK	https://software.broadinstitute.org/gatk/download/	RRID:SCR_001876
PathSeqPipelineSpark	https://gatkforums.broadinstitute.org/gatk/discussion/10913/how-to-run-the-pathseq-pipeline	RRID:SCR_005203
samtools	http://samtools.sourceforge.net/	RRID:SCR_002105