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. 2020 Jan 13;14(3):320–330. doi: 10.1111/irv.12717

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© 2020 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.

This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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Sample processing flow for KCH inpatient and KHDSS outpatient NP/OP specimens in the Kilifi County surveillance in coastal Kenya, 2009‐17. Sequencing generated 101 and 41 influenza A(H3N2) virus and A(H1N1)pdm09 virus WGS, respectively. One hundred and one A(H3N2) virus full‐length HA sequences were used for this report. KCH, Kilifi County Hospital; KHDSS, Kilifi Health and Demographic Surveillance System; NP/OP, nasopharyngeal/oropharyngeal specimen; MiSeq, Illumina MiSeq sequencer; WGS, whole‐genome sequencing