Table 1.
Amino acid nos. | LWS | MWS | UVS | ||||||||||
NoL1 | JSR1 | BVRh | A (4) | B (6) | C (2) | D (2) | E (3) | F (3) | G (2) | H (4) | I (4) | J (2) | K (1) |
110 | 107 | 94 | M3 L1 | M6 | M2 | L2 | M3 | L2 V1 | F2 | Y3 F1 | Y2 V1 L1 | F2 | F1 |
129 | 126 | 113 | Y4 | Y6 | Y2 | Y2 | Y3 | Y3 | Y2 | Y4 | H2 F1 Y1 | F1 Y1 | F1 |
134 | 131 | 118 | N4 | N6 | N2 | N2 | S3 | S3 | G2 | A4 | A2 S1 G1 | A2 | S1 |
194 | 191 | 178 | Y4 | Y6 | Y2 | Y2 | Y3 | Y3 | Y2 | Y4 | F3 Y1 | F2 | Y1 |
205 | 202 | 189 | T4 | T6 | T2 | T2 | T3 | T3 | F2 | F3 Y1 | F4 | F2 | F1 |
226 | 223 | 210 | F4 | F6 | F2 | Y2 | Y3 | F1 Y2 | Y2 | Y4 | F2 Y2 | W2 | Y1 |
318 | 317 | 292 | S4 | S5 ?1 | S2 | S2 | S3 | S3 | A2 | A4 | G3 A1 | A2 | A1 |
Amino acid sites are identified based on numbering in the NoL1 opsin of N. oerstedii (NoL1), the crystal structure of rhodopsin from the jumping spider Hasarius adansoni (JSR1; accession no. 6I9K_A), and bovine rhodopsin (BvRh; accession no. NP_001014890.1). Opsins are divided by spectral clades (LWS, MWS, and UVS) and subgroups (A to K). The number of sequences within each subgroup are indicated in the parentheses after each letter. Within each subgroup, all amino acids at that position are indicated, with the number of sequences encoding that amino acid indicated by subscript.