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. 2020 Apr 2;117(16):8948–8957. doi: 10.1073/pnas.1917303117

Table 1.

Amino acid positions identified by proximity to the chromophore that contain S-A or F-Y substitutions (residues in bold)

Amino acid nos. LWS MWS UVS
NoL1 JSR1 BVRh A (4) B (6) C (2) D (2) E (3) F (3) G (2) H (4) I (4) J (2) K (1)
110 107 94 M3 L1 M6 M2 L2 M3 L2 V1 F2 Y3 F1 Y2 V1 L1 F2 F1
129 126 113 Y4 Y6 Y2 Y2 Y3 Y3 Y2 Y4 H2 F1 Y1 F1 Y1 F1
134 131 118 N4 N6 N2 N2 S3 S3 G2 A4 A2 S1 G1 A2 S1
194 191 178 Y4 Y6 Y2 Y2 Y3 Y3 Y2 Y4 F3 Y1 F2 Y1
205 202 189 T4 T6 T2 T2 T3 T3 F2 F3 Y1 F4 F2 F1
226 223 210 F4 F6 F2 Y2 Y3 F1 Y2 Y2 Y4 F2 Y2 W2 Y1
318 317 292 S4 S5 ?1 S2 S2 S3 S3 A2 A4 G3 A1 A2 A1

Amino acid sites are identified based on numbering in the NoL1 opsin of N. oerstedii (NoL1), the crystal structure of rhodopsin from the jumping spider Hasarius adansoni (JSR1; accession no. 6I9K_A), and bovine rhodopsin (BvRh; accession no. NP_001014890.1). Opsins are divided by spectral clades (LWS, MWS, and UVS) and subgroups (A to K). The number of sequences within each subgroup are indicated in the parentheses after each letter. Within each subgroup, all amino acids at that position are indicated, with the number of sequences encoding that amino acid indicated by subscript.