Table 2.
Characterization of the viral sequence reads in forest musk deer faeces samples. nt nucleotides, aa amino acids
| Library ID (Total unique reads) | Family | Genus | Strain name | Accession number | No. of nt in the genome | No. of aa in protein | GC-content(%) | GenBank no. of the matches | Aa identities with the match(s) | Max_Contig | Total reads | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rep (Direction) | Cap (Direction) | |||||||||||
| L1(1136670) | Circoviridae | Circovirus | UJSL017 | MN621476 | 3025 | 355(−) | 380(+) | 42.6 | KU043411.1 | 62.54% | 2497 | 1123 |
| L2(991928) | None | None | UJSL001 | MN621482 | 3518 | 399(−) | 190(+) | 41 | KY487934.1 | 48.76% | 3448 | 583 |
| L3(307679) | Circoviridae | None | UJSL002 | MN621468 | 2665 | 283(−) | 372(+) | 50.8 | NC_030125.1 | 69.09% | 3919 | 205 |
| None | None | UJSL003 | MN621469 | 3212 | 281(−) | 173(+) | 46.5 | MH617688.1 | 44.00% | 3330 | 206 | |
| L5(777594) | Circoviridae | None | UJSL004 | MN621481 | 2866 | 390(−) | 204(+) | 40.6 | NC_039054.1 | 75.39% | 2053 | 41 |
| L6(530538) | Circoviridae | None | UJSL005 | MN604398 | 3852 | 428(−) | 692(+) | 42.4 | NC_026635.1 | 32.63% | 3155 | 473 |
| L7(1237606) | None | None | UJSL006 | MN621480 | 2148 | 327(+) | 203(+) | 32.4 | MK858258.1 | 58.86% | 2253 | 2863 |
| L8(802429) | ||||||||||||
| L9(369292) | None | None | UJSL007 | MN621470 | 2526 | 280(−) | 337(+) | 45.6 | MH500284.1/MH500317.1 | 95.54% | 2672 | 216 |
| Total(6153736) | ||||||||||||